HAMAP: Corynebacterium efficiens complete proteome
General information

Species:  Corynebacterium efficiens
Species code: COREF
Taxonomy: Bacteria; Actinobacteria; Actinobacteridae; Actinomycetales; Corynebacterineae; Corynebacteriaceae; Corynebacterium (TaxID: 152794) [NEWT/ NCBI]
Description: Bacteria from the genus Corynebacterium are Gram-positive, nonmotile rods which include both pathogenic and non-pathogenic species that can live in a large variety of habitats. In addition to being animal and human pathogens, they have been isolated from soil, plant material, waste water, and dairy products. Corynebacterium efficiens has been identified as a new glutamic-acid- producing species, isolated from soil and vegetables.
Properties: Presence of flagella: No
Human pathogen: No
Interaction: No
Number of membranes: 1
Number of inteins:0
Statistics: Number of COREF entries in the UniProt Knowledgebase: 2945 (409 in UniProtKB/Swiss-Prot + 2536 in UniProtKB/TrEMBL)


Genome(s) sequenced

Strain:    DSM 44549 / YS-314 / AJ 12310 / JCM 11189 / NBRC 100395
Genome structure:
• Chromosome EMBL accession number BA000035 (circular; 3,147,090 bp) (download entry)
• Plasmid pCE2 EMBL accession number AP005225 (circular; 23,743 bp) (download entry)
• Plasmid pCE3 EMBL accession number AP005226 (circular; 48,672 bp) (download entry)
Reference(s):
[1] MEDLINE=22723752; PubMed=12840036; [ NCBI , EBI , Israel , Japan ]
Nishio Y., Nakamura Y., Kawarabayasi Y., Usuda Y., Kimura E., Sugimoto S., Matsui K., Yamagishi A., Kikuchi H., Ikeo K., Gojobori T. ;
"Comparative complete genome sequence analysis of the amino acid replacements responsible for the thermostability of Corynebacterium efficiens.";
Genome Res. 13:1572-1579(2003).
[2] Kawarabayasi Y., Yamazaki J., Hino Y., Kikuchi H. ;
"The entire sequence of plasmid maintained by Corynebacterium efficiens YS-314.";
Submitted (MAY-2002) to the EMBL/GenBank/DDBJ databases.
Web links:
Official genome site(s):
http://www.bio.nite.go.jp/dogan/MicroTop?GENOME_ID=ce__G1
Other web sites:
CBS: http://www.cbs.dtu.dk/services/GenomeAtlas/show-genus.php?kingdom=Bacteria&GLgenus=Corynebacterium&GLspecies=efficiens&GLstrain=YS314
Entrez Genome Project: http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=txid196164%5Borgn%5D
GIB (DDBJ): http://gib.genes.nig.ac.jp/single/index.php?spid=Ceff_YS314
JVCI CMR: http://cmr.jcvi.org/tigr-scripts/CMR/GenomePage.cgi?database=ntce01
Karyn's Genomes: http://www.ebi.ac.uk/2can/genomes/bacteria/Corynebacterium_efficiens.html
PEDANT: http://pedant.gsf.de/pedant3htmlview/pedant3view?Method=analysis&Db=p3_p305_Cor_effic
 EBI Proteome Analysis page



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