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HAMAP: Dinoroseobacter shibae (strain DFL 12) complete proteome
General information

Species:  Dinoroseobacter shibae (strain DFL 12)
Species code: DINSH
Taxonomy: Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Dinoroseobacter (TaxID: 398580) [NEWT/ NCBI]
Description: Dinoroseobacter shibae (strain DFL 12), the type strain of a species from the Roseobacter clade, is a symbiont of the marine dinoflagellate Prorocentrum lima. P. lima produces okadaic acid, which can cause diarrhetic shellfish poisoning during red tides. The bacteria have unusual pigmentation; they are pink to light red in liquid culture in the dark and beige when grown in the light. On complex solid media they are wine-red. Individual cells grow as cocci 0.3 to 0.7 um in width and 0.3 to 2.0 um in length, surrounded or not by an extracellular polymer. They require minimally 1% seawater for growth. D.shibae is an aerobic anoxygenic phototroph (AAP), that is, it is incapable of anaerobic photosynthesis, and performs efficient photoinduced electron transfer only under aerobic conditions. It contains bacteriochlorophyll a and spheroidenone as its only carotenoid. It provides vitamins B1 and B12 to its dinoflagellate host; it has both an aerobic and anaerobic pathway for B12 synthesis. While the Roseobacter clade has been considered to comprise obligate aerobic bacteria, D. shibae is able to grow anaerobically using the alternative electron acceptors nitrate and dimethylsulfoxide (adapted from PMID 19741735).
Properties: Presence of flagella: Yes
Human pathogen: No
Interaction: No
Number of membranes: 2
Number of inteins:0
Statistics: Number of DINSH entries in the UniProt Knowledgebase: 4086 (275 in UniProtKB/Swiss-Prot + 3811 in UniProtKB/TrEMBL)


Genome(s) sequenced

Strain:    DFL 12
Genome structure:
• Chromosome EMBL accession number CP000830 (circular; 3,789,584 bp) (download entry)
• Plasmid pDSHI01 EMBL accession number CP000831 (circular; 190,506 bp) (download entry)
• Plasmid pDSHI02 EMBL accession number CP000832 (circular; 152,970 bp) (download entry)
• Plasmid pDSHI03 EMBL accession number CP000833 (circular; 126,304 bp) (download entry)
• Plasmid pDSHI04 EMBL accession number CP000834 (circular; 86,208 bp) (download entry)
• Plasmid pDSHI05 EMBL accession number CP000835 (circular; 72,296 bp) (download entry)
Reference(s):
[1] PubMed=19741735; [ NCBI , EBI , Israel , Japan ]
Wagner-Dobler I., Ballhausen B., Berger M., Brinkhoff T., Buchholz I., Bunk B., Cypionka H., Daniel R., Drepper T., Gerdts G., Hahnke S., Han C., Jahn D., Kalhoefer D., Kiss H., Klenk H.P., Kyrpides N., Liebl W., Liesegang H., Meincke L., Pati A., Petersen J., Piekarski T., Pommerenke C., Pradella S., Pukall R., Rabus R., Stackebrandt E., Thole S., Thompson L., Tielen P., Tomasch J., von Jan M., Wanphrut N., Wichels A., Zech H., Simon M. ;
"The complete genome sequence of the algal symbiont Dinoroseobacter shibae: a hitchhiker's guide to life in the sea.";
ISME J. 4:61-77(2010).
Web links:
Official genome site(s):
http://genome.jgi-psf.org/dinsh/dinsh.home.html
Other web sites:
Entrez Genome Project: http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&cmd=ShowDetailView&TermToSearch=17417
GIB (DDBJ): http://gib.genes.nig.ac.jp/single/index.php?spid=Dshi_DFL12
 EBI Proteome Analysis page



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