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HAMAP: Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) complete proteome
General information

Species:  Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622)
Species code: GEOBB
Taxonomy: Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter (TaxID: 404380) [NEWT/ NCBI]
Description: Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) is an anaerobic bacterium isolated from a subsurface petroleum contaminated aquifer sediment collected in Bemidji, Minnesotta (USA), near a site where Fe(III) reduction is important in aromatic hydrocarbon degradation. G. bemidjiensis is capable of oxidizing acetate and coupling that to reduction of Fe(III) (iron(III) citrate, amorphous iron(III) oxide, iron(III) pyrophosphate and iron(III) nitrilotriacetate). It utilizes ethanol, lactate, malate, pyruvate and succinate as electron donors and malate and fumarate as electron acceptors, and grows fast at 30 degrees Celsius.
Properties: Presence of flagella: Yes
Human pathogen: No
Interaction: No
Number of membranes: 2
Number of inteins:0
Statistics: Number of GEOBB entries in the UniProt Knowledgebase: 4048 (263 in UniProtKB/Swiss-Prot + 3785 in UniProtKB/TrEMBL)


Genome(s) sequenced

Strain:    Bem / ATCC BAA-1014 / DSM 16622
Genome structure:
Chromosome EMBL accession number CP001124 (circular; 4,615,150 bp) (download entry)
Reference(s):
[1] Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., Kiss H., Brettin T., Detter J.C., Han C., Kuske C.R., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Lykidis A., Lovley D., Richardson P. ;
"Complete sequence of Geobacter bemidjiensis BEM.";
Submitted (JUL-2008) to the EMBL/GenBank/DDBJ databases.
Web links:
Official genome site(s):
http://genome.jgi-psf.org/finished_microbes/geobe/geobe.home.html
Other web sites:
GIB (DDBJ): http://gib.genes.nig.ac.jp/single/index.php?spid=Gbem_Bem
PEDANT: http://pedant.gsf.de/pedant3htmlview/pedant3view?Method=analysis&Db=p3_p17707_Geo_bemid
 EBI Proteome Analysis page



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