Home Proteomes Families Hamap-Scan Documents Downloads Links
HAMAP: Gramella forsetii (strain KT0803) complete proteome
General information

Species:  Gramella forsetii (strain KT0803)
Species code: GRAFK
Taxonomy: Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Gramella (TaxID: 411154) [NEWT/ NCBI]
Description: Gramella forsetii (strain KT0803) is a marine aerobic heterotrophic representative of the bacterial phylum Bacteroides. It has been isolated from Noth Sea surface waters during a phytoplankton bloom. Its genome is made up of a single circular chromosome. The analysis of its predicted proteome reveals a combination of extensive glycolytic and proteolytic potential which, along with certain membrane transport characteristics, is consistant with the notion that Bacteroidetes are usually considered efficient utilizers of the biopolymers present in marine high molecular weight organic matter. Gramella forsetii possesses a gene encoding a potential deoxyhypusine synthase, a typically eukaryal and archaeal post-translational modification enzyme.
Properties: Presence of flagella: No
Human pathogen: No
Interaction: No
Number of membranes: 2
Number of inteins:0
Statistics: Number of GRAFK entries in the UniProt Knowledgebase: 3554 (204 in UniProtKB/Swiss-Prot + 3350 in UniProtKB/TrEMBL)


Genome(s) sequenced

Strain:    KT0803
Genome structure:
Chromosome EMBL accession number CU207366 (circular; 3,798,465 bp) (download entry)
Reference(s):
[1] PubMed=17107561; [ NCBI , EBI , Israel , Japan ]
Bauer M., Kube M., Teeling H., Richter M., Lombardot T., Allers E., Wuerdemann C.A., Quast C., Kuhl H., Knaust F., Woebken D., Bischof K., Mussmann M., Choudhuri J.V., Meyer F., Reinhardt R., Amann R.I., Gloeckner F.O. ;
"Whole genome analysis of the marine Bacteroidetes'Gramella forsetii' reveals adaptations to degradation of polymeric organic matter.";
Environ. Microbiol. 8:2201-2213(2006).
Web links:
Entrez Genome Project: http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=txid411154%5Borgn%5D
GIB (DDBJ): http://gib.genes.nig.ac.jp/single/index.php?spid=Gfor_KT0803
PEDANT: http://pedant.gsf.de/pedant3htmlview/pedant3view?Method=analysis&Db=p3_p18229_Gra_forse
 EBI Proteome Analysis page



Tools