HAMAP: Halobacterium salinarium (strain ATCC 700922 / JCM 11081 / NRC-1) (Halobacterium halobium) complete proteome
General information

Species:  Halobacterium salinarium (strain ATCC 700922 / JCM 11081 / NRC-1) (Halobacterium halobium)
Species code: HALSA
Taxonomy: Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halobacterium (TaxID: 64091) [NEWT/ NCBI]
Description: Aerobic halophilic chemoorganotroph growing on the degradation products of less halophilic organisms as the salinity reaches near saturation. Halobacterium species have adapted to optimal growth under conditions of extremely high salinity (10 times that of sea water).
Properties: Presence of flagella: Yes
Human pathogen: No
Interaction: No
Number of membranes: 1
Number of inteins: 1
Statistics: Number of HALSA entries in the UniProt Knowledgebase: 2426 (464 in UniProtKB/Swiss-Prot + 1962 in UniProtKB/TrEMBL)


Genome(s) sequenced

Strain:    ATCC 700922 / JCM 11081 / NRC-1
Genome structure:
• Chromosome EMBL accession number AE004437 (circular; 2,014,239 bp) (download entry)
• Plasmid pNRC100 EMBL accession number AF016485 (circular; 191,346 bp) (download entry)
• Plasmid pNRC200 EMBL accession number AE004438 (circular; 365,425 bp) (download entry)
Reference(s):
[1] MEDLINE=20504483; PubMed=11016950; [ NCBI , EBI , Israel , Japan ]
Ng W.V., Kennedy S.P., Mahairas G.G., Berquist B., Pan M., Shukla H.D., Lasky S.R., Baliga N.S., Thorsson V., Sbrogna J., Swartzell S., Weir D., Hall J., Dahl T.A., Welti R., Goo Y.A., Leithauser B., Keller K., Cruz R., Danson M.J., Hough D.W., Maddocks D.G., Jablonski P.E., Krebs M.P., Angevine C.M., Dale H., Isenbarger T.A., Peck R.F., Pohlschroder M., Spudich J.L., Jung K.-H., Alam M., Freitas T., Hou S., Daniels C.J., Dennis P.P., Omer A.D., Ebhardt H., Lowe T.M., Liang P., Riley M., Hood L., DasSarma S. ;
"Genome sequence of Halobacterium species NRC-1.";
Proc. Natl. Acad. Sci. U.S.A. 97:12176-12181(2000).
[2] MEDLINE=99063795; PubMed=9847077; [ NCBI , EBI , Israel , Japan ]
Ng W.V., Ciufo S.A., Smith T.M., Bumgarner R.E., Baskin D., Faust J., Hall B., Loretz C., Seto J., Slagel J., Hood L., DasSarma S. ;
"Snapshot of a large dynamic replicon in a halophilic archaeon: megaplasmid or minichromosome?";
Genome Res. 8:1131-1141(1998).
Web links:
Official genome site(s):
http://halo4.umbi.umd.edu/cgi-bin/haloweb/nrc1.pl
Other web sites:
CBS: http://www.cbs.dtu.dk/services/GenomeAtlas/show-genus.php?kingdom=Archaea&GLgenus=Halobacterium&GLspecies=species&GLstrain=NRC1
Entrez Genome Project: http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=txid64091%5Borgn%5D
GIB (DDBJ): http://gib.genes.nig.ac.jp/single/index.php?spid=Halo_NRC1
JVCI CMR: http://cmr.jcvi.org/tigr-scripts/CMR/GenomePage.cgi?database=nths01
Karyn's Genomes: http://www.ebi.ac.uk/2can/genomes/archaea/Halobacterium.html
PEDANT: http://pedant.gsf.de/pedant3htmlview/pedant3view?Method=analysis&Db=p3_p217_Hal_NRC1
 EBI Proteome Analysis page



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