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HAMAP: Helicobacter pylori J99 (Campylobacter pylori J99) complete proteome
General information

Species:  Helicobacter pylori J99 (Campylobacter pylori J99)
Species code: HELPJ
Taxonomy: Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; Helicobacteraceae; Helicobacter (TaxID: 85963) [NEWT/ NCBI]
Description: Micro-aerophilic, Gram-negative, slow-growing, spiral-shaped and flagellated organism. H.pylori is probably the most common cause of chronic bacterial infection of humans, present in almost half of the world population. The presence of the bacterium in the gastric mucosa is associated with chronic active gastritis and is implicated in more severe gastric diseases, including chronic atrophic gastritis, peptic ulceration and mucosa-associated lymphoid tissue lymphomas. Strain J99 was isolated in the USA in 1994 from a patient with a duodenal ulcer.
Properties: Presence of flagella: Yes
Human pathogen: Yes
Interaction: Animal pathogen in Mammalia
Number of membranes: 2
Number of inteins:0
Statistics: Number of HELPJ entries in the UniProt Knowledgebase: 1488 (565 in UniProtKB/Swiss-Prot + 923 in UniProtKB/TrEMBL)


Genome(s) sequenced

Strain:    J99
Genome structure:
Chromosome EMBL accession number AE001439 (circular; 1,643,831 bp) (download entry)
Reference(s):
[1] MEDLINE=99120557; PubMed=9923682; [ NCBI , EBI , Israel , Japan ]
Alm R.A., Ling L.-S.L., Moir D.T., King B.L., Brown E.D., Doig P.C., Smith D.R., Noonan B., Guild B.C., deJonge B.L., Carmel G., Tummino P.J., Caruso A., Uria-Nickelsen M., Mills D.M., Ives C., Gibson R., Merberg D., Mills S.D., Jiang Q., Taylor D.E., Vovis G.F., Trust T.J. ;
"Genomic sequence comparison of two unrelated isolates of the human gastric pathogen Helicobacter pylori.";
Nature 397:176-180(1999).
Web links:
CampyDB: http://xbase.bham.ac.uk/campydb/genome.pl?id=1108
CBS: http://www.cbs.dtu.dk/services/GenomeAtlas/show-genus.php?kingdom=Bacteria&GLgenus=Helicobacter&GLspecies=pylori&GLstrain=J99
Entrez Genome Project: http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=txid85963%5Borgn%5D
GIB (DDBJ): http://gib.genes.nig.ac.jp/single/index.php?spid=Hpyl_J99
JVCI CMR: http://cmr.jcvi.org/tigr-scripts/CMR/GenomePage.cgi?database=nthp01
Karyn's Genomes: http://www.ebi.ac.uk/2can/genomes/bacteria/Helicobacter_pylori.html
PEDANT: http://pedant.gsf.de/pedant3htmlview/pedant3view?Method=analysis&Db=p3_p234_Hel_pylor
PyloriGene: http://genolist.pasteur.fr/PyloriGene/genome.cgi
 EBI Proteome Analysis page



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