HAMAP: Korarchaeum cryptofilum (strain OPF8) complete proteome
General information

Species:  Korarchaeum cryptofilum (strain OPF8)
Species code: KORCO
Taxonomy: Archaea; Korarchaeota; Candidatus Korarchaeum (TaxID: 374847) [NEWT/ NCBI]
Description: This hyperthermophilic organism was isolated from sediment and hot spring samples from Obsidian Pool, Yellowstone National Park, USA. It grows best at about 85 degrees Celsius, under strictly anaerobic conditions at pH 6.5. As it is at present uncultured it was assembled from whole genome shotgun sequencing. Cells hybridizing to probes specific to the DNA sequences were ultrathin filaments under 0.2 um in diameter with an average length of 15 um, although cells were observed with lengths up to 100 um. There is a paracrystalline S layer surrounding the cells. The predicted gene set suggests that K.cryptofilum grows heterotrophically, using a variety of peptide and amino acid degradation pathways.
Properties: Presence of flagella: not known
Human pathogen: No
Interaction: No
Number of membranes: 1
Number of inteins:0
Statistics: Number of KORCO entries in the UniProt Knowledgebase: 1602 (71 in UniProtKB/Swiss-Prot + 1531 in UniProtKB/TrEMBL)


Genome(s) sequenced

Strain:    OPF8
Genome structure:
Chromosome EMBL accession number CP000968 (circular; 1,590,757 bp) (download entry)
Reference(s):
[1] PubMed=18535141; [ NCBI , EBI , Israel , Japan ]
Elkins J.G., Podar M., Graham D.E., Makarova K.S., Wolf Y., Randau L., Hedlund B.P., Brochier-Armanet C., Kunin V., Anderson I., Lapidus A., Goltsman E., Barry K., Koonin E.V., Hugenholtz P., Kyrpides N., Wanner G., Richardson P., Keller M., Stetter K.O. ;
"A korarchaeal genome reveals new insights into the evolution of the Archaea.";
Proc. Natl. Acad. Sci. U.S.A. 105:8102-8107(2008).
Web links:
Official genome site(s):
http://genome.jgi-psf.org/korcr/korcr.info.html
Other web sites:
Entrez Genome Project: http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=txid374847%5Borgn%5D
Genome Atlas: http://www.cbs.dtu.dk/services/gwBrowser/precalc/project.php?pid=16525
GIB (DDBJ): http://gib.genes.nig.ac.jp/single/index.php?spid=Kcry_OPF8
GOLD: http://genomesonline.org/GOLD_CARDS/Gc00747.html
img/geba: http://img.jgi.doe.gov/cgi-bin/geba/main.cgi?section=TaxonDetail&page=taxonDetail&taxon_oid=641522611
PEDANT: http://pedant.gsf.de/pedant3htmlview/pedant3view?Method=analysis&Db=p3_p16525_Kor_crypt
 EBI Proteome Analysis page



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