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HAMAP: Lactobacillus plantarum (strain JDM1) complete proteome
General information

Species:  Lactobacillus plantarum (strain JDM1)
Species code: LACPJ
Taxonomy: Bacteria; Firmicutes; Lactobacillales; Lactobacillaceae; Lactobacillus (TaxID: 644042) [NEWT/ NCBI]
Description: Lactobacilli are normal inhabitants of the gastrointestinal tract of man and animals where they are widely considered to exert a number of beneficial roles including immunomodulation, interference with enteric pathogens, and maintenance of a healthy intestinal microflora. The genus Lactobacillus presently comprises more than 50 recognized species of non pathogenic bacteria which in addition to their probiotic effects are useful to human as indispensable agents for the fermentation of foods and feed.

Strain JDM1 is a widely used Chinese commercial LAB with several probiotic functions. It includes 2 plasmids that have been previously sequenced and published and that were not included in the genome submission (AY096004 and AY096005, Plasmid 50:70-73, 2003). The entire genomic sequence of L. plantarum JDM1 was a little shorter than that of L. plantarum WCSF1 (LACPL). The prophage sequences and locations of JDM1 and WCFS1 are highly variable between the two strain (adapted from PMID 19465650).
Properties: Presence of flagella: No
Human pathogen: No
Interaction: Animal commensal in Mammalia
Number of membranes: 1
Number of inteins:0
Statistics: Number of LACPJ entries in the UniProt Knowledgebase: 2948 (4 in UniProtKB/Swiss-Prot + 2944 in UniProtKB/TrEMBL)


Genome(s) sequenced

Strain:    JDM1
Genome structure:
Chromosome EMBL accession number CP001617 (circular; 3,197,759 bp) (download entry)
Reference(s):
[1] PubMed=19465650; [ NCBI , EBI , Israel , Japan ]
Zhang Z.-Y., Liu C., Zhu Y.-Z., Zhong Y., Zhu Y.-Q., Zheng H.-J., Zhao G.-P., Wang S.-Y., Guo X.-K. ;
"Complete genome sequence of Lactobacillus plantarum JDM1.";
J. Bacteriol. 191:5020-5021(2009).
Web links:
Entrez Genome Project: http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&cmd=ShowDetailView&TermToSearch=32969
Genome Atlas: http://www.cbs.dtu.dk/services/gwBrowser/precalc/project.php?pid=32969
GIB (DDBJ): http://gib.genes.nig.ac.jp/single/index.php?spid=Lpla_JDM1
 EBI Proteome Analysis page



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