HAMAP: Lactobacillus plantarum (strain ATCC BAA-793 / NCIMB 8826 / WCFS1) complete proteome
General information

Species:  Lactobacillus plantarum (strain ATCC BAA-793 / NCIMB 8826 / WCFS1)
Species code: LACPL
Taxonomy: Bacteria; Firmicutes; Lactobacillales; Lactobacillaceae; Lactobacillus (TaxID: 220668) [NEWT/ NCBI]
Description: Lactobacillus plantarum is a flexible and versatile species that is encountered in a variety of environmental niches, including some dairy, meat, and many vegetable and plant fermentations. L.plantarum is frequently encountered as a natural inhabitant of the human gastrointestinal tract.
Properties: Presence of flagella: No
Human pathogen: No
Interaction: Animal commensal in Mammalia
Number of membranes: 1
Number of inteins:0
Statistics: Number of LACPL entries in the UniProt Knowledgebase: 3103 (458 in UniProtKB/Swiss-Prot + 2645 in UniProtKB/TrEMBL)


Genome(s) sequenced

Strain:    ATCC BAA-793 / NCIMB 8826 / WCFS1
Genome structure:
• Chromosome EMBL accession number AL935263 (circular; 3,308,273 bp) (download entry)
• Plasmid pWCFS101 EMBL accession number CR377164 (circular; 1,917 bp) (download entry)
• Plasmid pWCFS102 EMBL accession number CR377165 (circular; 2,365 bp) (download entry)
• Plasmid pWCFS103 EMBL accession number CR377166 (circular; 36,069 bp) (download entry)
Reference(s):
[1] MEDLINE=22480296; PubMed=12566566; [ NCBI , EBI , Israel , Japan ]
Kleerebezem M., Boekhorst J., van Kranenburg R., Molenaar D., Kuipers O.P., Leer R., Tarchini R., Peters S.A., Sandbrink H.M., Fiers M.W.E.J., Stiekema W., Klein Lankhorst R.M., Bron P.A., Hoffer S.M., Nierop Groot M.N., Kerkhoven R., De Vries M., Ursing B., De Vos W.M., Siezen R.J. ;
"Complete genome sequence of Lactobacillus plantarum WCFS1.";
Proc. Natl. Acad. Sci. U.S.A. 100:1990-1995(2003).
[2] PubMed=15746322; [ NCBI , EBI , Israel , Japan ]
van Kranenburg R., Golic N., Bongers R., Leer R.J., de Vos W.M., Siezen R.J., Kleerebezem M. ;
"Functional analysis of three plasmids from Lactobacillus plantarum.";
Appl. Environ. Microbiol. 71:1223-1230(2005).
Web links:
Official genome site(s):
http://www.cmbi.kun.nl/lactobacillus/
Other web sites:
CBS: http://www.cbs.dtu.dk/services/GenomeAtlas/show-genus.php?kingdom=Bacteria&GLgenus=Lactobacillus&GLspecies=plantarum&GLstrain=WCFS1
Entrez Genome Project: http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=txid220668%5Borgn%5D
GIB (DDBJ): http://gib.genes.nig.ac.jp/single/index.php?spid=Lpla_WCFS1
JVCI CMR: http://cmr.jcvi.org/tigr-scripts/CMR/GenomePage.cgi?database=ntlp01
Karyn's Genomes: http://www.ebi.ac.uk/2can/genomes/bacteria/Lactobacillus_plantarum.html
PEDANT: http://pedant.gsf.de/pedant3htmlview/pedant3view?Method=analysis&Db=p3_p356_Lac_plant
 EBI Proteome Analysis page



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