Home Proteomes Families Hamap-Scan Documents Downloads Links
HAMAP: Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) complete proteome
General information

Species:  Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280)
Species code: META3
Taxonomy: Archaea; Euryarchaeota; Methanococci; Methanococcales; Methanococcaceae; Methanococcus (TaxID: 419665) [NEWT/ NCBI]
Description: Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) is an anaerobic archaeon of the phylum Euryarchaeota. It was isolated from deep marine sediment from the Nankai Trough off the coast of Japan. This organism is a methanogen, able to use hydrogen or formate to reduce CO2. Strain Nankai-3 is the type strain and will be used for comparative analysis.
Properties: Presence of flagella: Yes
Human pathogen: No
Interaction: No
Number of membranes: 1
Number of inteins: 6 in 6 different sequences
Statistics: Number of META3 entries in the UniProt Knowledgebase: 1490 (227 in UniProtKB/Swiss-Prot + 1263 in UniProtKB/TrEMBL)


Genome(s) sequenced

Strain:    Nankai-3 / ATCC BAA-1280
Genome structure:
Chromosome EMBL accession number CP000743 (circular; 1,569,500 bp) (download entry)
Reference(s):
[1] Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Lykidis A., Sieprawska-Lupa M., Whitman W.B., Richardson P. ;
"Complete sequence of Methanococcus aeolicus Nankai-3.";
Submitted (JUN-2007) to the EMBL/GenBank/DDBJ databases.
Web links:
Entrez Genome Project: http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&cmd=ShowDetailView&TermToSearch=18641
Genome Atlas: http://www.cbs.dtu.dk/services/gwBrowser/project.php?pid=18641
GIB (DDBJ): http://gib.genes.nig.ac.jp/single/index.php?spid=Maeo_Nankai3
PEDANT: http://pedant.gsf.de/pedant3htmlview/pedant3view?Method=analysis&Db=p3_p18641_Met_aeoli
 EBI Proteome Analysis page



Tools