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HAMAP: Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938) complete proteome
General information

Species:  Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938)
Species code: METKA
Taxonomy: Archaea; Euryarchaeota; Methanopyri; Methanopyrales; Methanopyraceae; Methanopyrus (TaxID: 190192) [NEWT/ NCBI]
Description: Rod-shaped Gram positive methanogen that grows at 80-110 degrees Celsius. It was isolated from the sea floor at the base of a 2000 m-deep "black smoker" chimney in the Gulf of California.
Properties: Presence of flagella: not known
Human pathogen: No
Interaction: No
Number of membranes: 1
Number of inteins: 5 in 5 different sequences
Statistics: Number of METKA entries in the UniProt Knowledgebase: 1687 (385 in UniProtKB/Swiss-Prot + 1302 in UniProtKB/TrEMBL)


Genome(s) sequenced

Strain:    AV19 / DSM 6324 / JCM 9639 / NBRC 100938
Genome structure:
Chromosome EMBL accession number AE009439 (circular; 1,694,969 bp) (download entry)
Reference(s):
[1] MEDLINE=21927647; PubMed=11930014; [ NCBI , EBI , Israel , Japan ]
Slesarev A.I., Mezhevaya K.V., Makarova K.S., Polushin N.N., Shcherbinina O.V., Shakhova V.V., Belova G.I., Aravind L., Natale D.A., Rogozin I.B., Tatusov R.L., Wolf Y.I., Stetter K.O., Malykh A.G., Koonin E.V., Kozyavkin S.A. ;
"The complete genome of hyperthermophile Methanopyrus kandleri AV19 and monophyly of archaeal methanogens.";
Proc. Natl. Acad. Sci. U.S.A. 99:4644-4649(2002).
Web links:
CBS: http://www.cbs.dtu.dk/services/GenomeAtlas/show-genus.php?kingdom=Archaea&GLgenus=Methanopyrus&GLspecies=kandleri&GLstrain=AV19
Entrez Genome Project: http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=txid190192%5Borgn%5D
GIB (DDBJ): http://gib.genes.nig.ac.jp/single/index.php?spid=Mkan_AV19
JVCI CMR: http://cmr.jcvi.org/tigr-scripts/CMR/GenomePage.cgi?database=ntmk01
Karyn's Genomes: http://www.ebi.ac.uk/2can/genomes/archaea/Methanopyrus_kandleri.html
PEDANT: http://pedant.gsf.de/pedant3htmlview/pedant3view?Method=analysis&Db=p3_p294_Met_kandl
 EBI Proteome Analysis page



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