HAMAP: Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831) complete proteome
General information

Species:  Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831)
Species code: METRJ
Taxonomy: Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium (TaxID: 426355) [NEWT/ NCBI]
Description: Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831) is a methylotrophic non-halophilic bacterium. It nodulates and fixes nitrogen in symbiosis with legumes. Methylobacterium represents a branch of the Rhizobia which grow facultatively on methanol.
Properties: Presence of flagella: No
Human pathogen: No
Interaction: Plant symbiont
Number of membranes: 2
Number of inteins:0
Statistics: Number of METRJ entries in the UniProt Knowledgebase: 6388 (221 in UniProtKB/Swiss-Prot + 6167 in UniProtKB/TrEMBL)


Genome(s) sequenced

Strain:    ATCC 27329 / DSM 1819 / JCM 2831
Genome structure:
• Chromosome EMBL accession number CP001001 (circular; 6,077,833 bp) (download entry)
• Plasmid pMRAD01 EMBL accession number CP001002 (circular; 586,164 bp) (download entry)
• Plasmid pMRAD02 EMBL accession number CP001003 (circular; 47,003 bp) (download entry)
• Plasmid pMRAD03 EMBL accession number CP001004 (circular; 42,985 bp) (download entry)
• Plasmid pMRAD04 EMBL accession number CP001005 (circular; 37,743 bp) (download entry)
• Plasmid pMRAD05 EMBL accession number CP001006 (circular; 36,410 bp) (download entry)
• Plasmid pMRAD06 EMBL accession number CP001007 (circular; 27,836 bp) (download entry)
• Plasmid pMRAD07 EMBL accession number CP001008 (circular; 22,114 bp) (download entry)
• Plasmid pMRAD08 EMBL accession number CP001009 (circular; 21,022 bp) (download entry)
Reference(s):
[1] Copeland A., Lucas S., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., Kiss H., Brettin T., Detter J.C., Han C., Kuske C.R., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N., Marx C.J., Richardson P. ;
"Complete sequence of chromosome of Methylobacterium radiotolerans JCM 2831.";
Submitted (MAR-2008) to the EMBL/GenBank/DDBJ databases.
[2] Copeland A., Lucas S., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., Kiss H., Brettin T., Detter J.C., Han C., Kuske C.R., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N., Marx C.J., Richardson P. ;
"Complete sequence of plasmid1 of Methylobacterium radiotolerans JCM 2831.";
Submitted (MAR-2008) to the EMBL/GenBank/DDBJ databases.
[3] Copeland A., Lucas S., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., Kiss H., Brettin T., Detter J.C., Han C., Kuske C.R., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N., Marx C.J., Richardson P. ;
"Complete sequence of plasmid2 of Methylobacterium radiotolerans JCM 2831.";
Submitted (MAR-2008) to the EMBL/GenBank/DDBJ databases.
[4] Copeland A., Lucas S., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., Kiss H., Brettin T., Detter J.C., Han C., Kuske C.R., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N., Marx C.J., Richardson P. ;
"Complete sequence of plasmid3 of Methylobacterium radiotolerans JCM 2831.";
Submitted (MAR-2008) to the EMBL/GenBank/DDBJ databases.
[5] Copeland A., Lucas S., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., Kiss H., Brettin T., Detter J.C., Han C., Kuske C.R., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N., Marx C.J., Richardson P. ;
"Complete sequence of plasmid4 of Methylobacterium radiotolerans JCM 2831.";
Submitted (MAR-2008) to the EMBL/GenBank/DDBJ databases.
[6] Copeland A., Lucas S., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., Kiss H., Brettin T., Detter J.C., Han C., Kuske C.R., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N., Marx C.J., Richardson P. ;
"Complete sequence of plasmid5 of Methylobacterium radiotolerans JCM 2831.";
Submitted (MAR-2008) to the EMBL/GenBank/DDBJ databases.
[7] Copeland A., Lucas S., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., Kiss H., Brettin T., Detter J.C., Han C., Kuske C.R., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N., Marx C.J., Richardson P. ;
"Complete sequence of plasmid6 of Methylobacterium radiotolerans JCM 2831.";
Submitted (MAR-2008) to the EMBL/GenBank/DDBJ databases.
[8] Copeland A., Lucas S., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., Kiss H., Brettin T., Detter J.C., Han C., Kuske C.R., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N., Marx C.J., Richardson P. ;
"Complete sequence of plasmid7 of Methylobacterium radiotolerans JCM 2831.";
Submitted (MAR-2008) to the EMBL/GenBank/DDBJ databases.
[9] Copeland A., Lucas S., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., Kiss H., Brettin T., Detter J.C., Han C., Kuske C.R., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N., Marx C.J., Richardson P. ;
"Complete sequence of plasmid8 of Methylobacterium radiotolerans JCM 2831.";
Submitted (MAR-2008) to the EMBL/GenBank/DDBJ databases.
Web links:
Official genome site(s):
http://genome.jgi-psf.org/finished_microbes/metra/metra.home.html
Other web sites:
Entrez Genome Project: http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&cmd=ShowDetailView&TermToSearch=18817
Genome Atlas: http://www.cbs.dtu.dk/services/gwBrowser/project.php?pid=18817
GIB (DDBJ): http://gib.genes.nig.ac.jp/single/index.php?spid=Mrad_JCM2831
PEDANT: http://pedant.gsf.de/pedant3htmlview/pedant3view?Method=analysis&Db=p3_p18817_Met_radio
 EBI Proteome Analysis page



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