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Species code:	MYCGI
Taxonomy:	Bacteria; Actinobacteria; Actinobacteridae; Actinomycetales; Corynebacterineae; Mycobacteriaceae; Mycobacterium (TaxID: 350054) [NEWT/ NCBI]
Description:	Mycobacterium gilvum PYR-GCK (ATCC 700033), formerly M. flavescens, was isolated from river sediment based on its ability to degrade polycyclic aromatic hydrocarbons (PAH) such as the four-benzene-ring aromatic hydrocarbon, pyrene, as a sole source of carbon and energy. It also degrades phenanthrene but not benzo(a)pyrene. It is resistant to ampicillin but not to other antibiotics tested, including isoniazid. It is able to form biofilm (adapted from PubMed 17578427).
Properties:	Presence of flagella: No Human pathogen: not known Interaction: No Number of membranes: 1 Number of inteins: 1
Statistics:	Number of MYCGI entries in the UniProt Knowledgebase: 5499 (282 in UniProtKB/Swiss-Prot + 5217 in UniProtKB/TrEMBL)

Genome structure:	• Chromosome EMBL accession number CP000656 (circular; 5,619,607 bp) (download entry) • Plasmid pMFLV01 EMBL accession number CP000657 (linear; 321,253 bp) (download entry) • Plasmid pMFLV02 EMBL accession number CP000658 (circular; 25,309 bp) (download entry) • Plasmid pMFLV03 EMBL accession number CP000659 (circular; 16,660 bp) (download entry)
Reference(s):	[1] Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N., Miller C., Richardson P. ; "Complete sequence of chromosome of Mycobacterium gilvum PYR-GCK."; Submitted (APR-2007) to the EMBL/GenBank/DDBJ databases. [2] Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N., Miller C., Richardson P. ; "Complete sequence of plasmid 1 pMFLV01 of Mycobacterium gilvum PYR-GCK."; Submitted (APR-2007) to the EMBL/GenBank/DDBJ databases. [3] Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N., Miller C., Richardson P. ; "Complete sequence of plasmid 2 pMFLV02 of Mycobacterium gilvum PYR-GCK."; Submitted (APR-2007) to the EMBL/GenBank/DDBJ databases. [4] Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N., Miller C., Richardson P. ; "Complete sequence of plasmid 3 pMFLV03 of Mycobacterium gilvum PYR-GCK."; Submitted (APR-2007) to the EMBL/GenBank/DDBJ databases.
Web links:	Official genome site(s): http://genome.jgi-psf.org/finished_microbes/mycfl/mycfl.home.html Other web sites: Entrez Genome Project: http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&cmd=ShowDetailView&TermToSearch=15760 Genome Atlas: http://www.cbs.dtu.dk/services/gwBrowser/precalc/project.php?pid=15760 GIB (DDBJ): http://gib.genes.nig.ac.jp/single/index.php?spid=Mgil_PYRGCK GOLD: http://genomesonline.org/GOLD_CARDS/Gc00534.html MycoDB: http://xbase.bham.ac.uk/mycodb/genome.pl?id=1162 PEDANT: http://pedant.gsf.de/pedant3htmlview/pedant3view?Method=analysis&Db=p3_p15760_Myc_gilvu  EBI Proteome Analysis page

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