Home Proteomes Families Hamap-Scan Documents Downloads Links
HAMAP: Mycobacterium sp. (strain MCS) complete proteome
General information

Species:  Mycobacterium sp. (strain MCS)
Species code: MYCSS
Taxonomy: Bacteria; Actinobacteria; Actinobacteridae; Actinomycetales; Corynebacterineae; Mycobacteriaceae; Mycobacterium (TaxID: 164756) [NEWT/ NCBI]
Description: Mycobacterium MCS was isolated from soil in Libby, Montana, USA, the site of a former lumber and plywood mill. The soil is contaminated by polycyclic aromatic hydrocarbons (PAH), and MCS is one of several indigenous mycobacteria isolated from this site that are able to degrade high molecular weight PAH including benzo(a)pyrene and pyrene. It is a long rod, fast growing mycobacterium able to be used in soil bioremediation.
Properties: Presence of flagella: No
Human pathogen: No
Interaction: No
Number of membranes: 1
Number of inteins: 1
Statistics: Number of MYCSS entries in the UniProt Knowledgebase: 5589 (316 in UniProtKB/Swiss-Prot + 5273 in UniProtKB/TrEMBL)


Genome(s) sequenced

Strain:    MCS
Genome structure:
• Chromosome EMBL accession number CP000384 (circular; 5,705,448 bp) (download entry)
• Plasmid pMCS1 EMBL accession number CP000385 (linear; 215,075 bp) (download entry)
Reference(s):
[1] Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Martinez M., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Kim E., Miller C.D., Hughes J.E., Anderson A.J., Sims R.C., Richardson P. ;
"Complete sequence of chromosome of Mycobacterium sp. MCS.";
Submitted (JUN-2006) to the EMBL/GenBank/DDBJ databases.
[2] Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Martinez M., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Kim E., Miller C.D., Hughes J.E., Anderson A.J., Sims R.C., Richardson P. ;
"Complete sequence of plasmid of Mycobacterium sp. MCS.";
Submitted (JUN-2006) to the EMBL/GenBank/DDBJ databases.
Web links:
Entrez Genome Project: http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=txid164756%5Borgn%5D
Genome Atlas: http://www.cbs.dtu.dk/services/gwBrowser/precalc/project.php?pid=15762
GIB (DDBJ): http://gib.genes.nig.ac.jp/single/index.php?spid=Myco_MCS
GOLD: http://genomesonline.org/GOLD_CARDS/Gc00392.html
PEDANT: http://pedant.gsf.de/pedant3htmlview/pedant3view?Method=analysis&Db=p3_p15762_Myc_MCS
 EBI Proteome Analysis page



Tools