HAMAP

HAMAP: Nocardia farcinica (strain IFM 10152) complete proteome

General information

Species: Nocardia farcinica (strain IFM 10152)

Species code:	NOCFA
Taxonomy:	Bacteria; Actinobacteria; Actinobacteridae; Actinomycetales; Corynebacterineae; Nocardiaceae; Nocardia (TaxID: 247156) [NEWT/ NCBI]
Description:	Gram-positive, filamentous-growing soil saprophyte. It can cause the disease nocardiosis in humans: an acute, subacute, or chronic infectious disease occurring in cutaneous and pulmonary tissues, and also in the central nervous system.
Properties:	Presence of flagella: No Human pathogen: Yes Interaction: Saprophyte; Animal pathogen in Mammalia Number of membranes: 1 Number of inteins: 2 in 2 different sequences
Statistics:	Number of NOCFA entries in the UniProt Knowledgebase: 5941 (391 in UniProtKB/Swiss-Prot + 5550 in UniProtKB/TrEMBL)

Genome(s) sequenced

Strain: IFM 10152

Genome structure:

Reference(s):

[1]	PubMed=15466710; [ NCBI , EBI , Israel , Japan ] Ishikawa J., Yamashita A., Mikami Y., Hoshino Y., Kurita H., Hotta K., Shiba T., Hattori M. ; "The complete genomic sequence of Nocardia farcinica IFM 10152."; Proc. Natl. Acad. Sci. U.S.A. 101:14925-14930(2004).

Web links:

Official genome site(s):

http://nocardia.nih.go.jp

Other web sites:
CBS:	http://www.cbs.dtu.dk/services/GenomeAtlas/show-genus.php?kingdom=Bacteria&GLgenus=Nocardia&GLspecies=farcinica&GLstrain=IFM10152
Entrez Genome Project:	http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=txid247156%5Borgn%5D
GIB (DDBJ):	http://gib.genes.nig.ac.jp/single/index.php?spid=Nfar_IFM10152
JVCI CMR:	http://cmr.jcvi.org/tigr-scripts/CMR/GenomePage.cgi?database=ntnf01
Karyn's Genomes:	http://www.ebi.ac.uk/2can/genomes/bacteria/Nocardia_farcinica.html
PEDANT:	http://pedant.gsf.de/pedant3htmlview/pedant3view?Method=analysis&Db=p3_p13117_Noc_farci

EBI Proteome Analysis page

Tools

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