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HAMAP: Pelagibacter ubique (strain HTCC1062) complete proteome
General information

Species:  Pelagibacter ubique (strain HTCC1062)
Species code: PELUB
Taxonomy: Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; SAR11 cluster; Candidatus Pelagibacter (TaxID: 335992) [NEWT/ NCBI]
Description: Pelagibacter ubique belongs to the SAR11 clade, which consists of small, heterotrophic marine alphaproteobacteria that live in the oceans, where they make up about 25% of all microbial cells. P.ubique has the smallest genome among free-living microorganisms. It has complete biosynthetic pathways for all 20 amino acids. It has no pseudogenes, extrachromosomal elements, transposons, introns or inteins. There is no evidence of DNA originating from recent horizontal transfer events.
Properties: Presence of flagella: No
Human pathogen: No
Interaction: No
Number of membranes: 2
Number of inteins:0
Statistics: Number of PELUB entries in the UniProt Knowledgebase: 1354 (234 in UniProtKB/Swiss-Prot + 1120 in UniProtKB/TrEMBL)


Genome(s) sequenced

Strain:    HTCC1062
Genome structure:
Chromosome EMBL accession number CP000084 (circular; 1,308,759 bp) (download entry)
Reference(s):
[1] PubMed=16109880; [ NCBI , EBI , Israel , Japan ]
Giovannoni S.J., Tripp H.J., Givan S., Podar M., Vergin K.L., Baptista D., Bibbs L., Eads J., Richardson T.H., Noordewier M., Rappe M.S., Short J.M., Carrington J.C., Mathur E.J. ;
"Genome streamlining in a cosmopolitan oceanic bacterium.";
Science 309:1242-1245(2005).
Web links:
CBS: http://www.cbs.dtu.dk/services/GenomeAtlas/show-genus.php?kingdom=Bacteria&GLgenus=Pelagibacter&GLspecies=ubique&GLstrain=HTCC1062
Entrez Genome Project: http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=txid335992%5Borgn%5D
GIB (DDBJ): http://gib.genes.nig.ac.jp/single/index.php?spid=Pubi_HTCC1062
JVCI CMR: http://cmr.jcvi.org/tigr-scripts/CMR/GenomePage.cgi?database=ntcp06
PEDANT: http://pedant.gsf.de/pedant3htmlview/pedant3view?Method=analysis&Db=p3_p13989_Pel_ubiqu
 EBI Proteome Analysis page



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