Home | Contact

Species code:	PHOLL
Taxonomy:	Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Photorhabdus (TaxID: 243265) [NEWT/ NCBI]
Description:	Photorhabdus luminescens is a motile, bioluminescent, enterobacterium which is pathogenic to a wide range of insects but lives in symbiosis with soil entomopathogenic nematodes.The life cycle of the bacterium is composed of a symbiotic stage in the nematode and a virulent stage in the insect larvae. The genome encodes a large number of adhesins, toxins, hemolysins, proteases and lipases, and contains a wide array of antibiotic synthesizing genes (adapted from PMID 14528314).
Properties:	Presence of flagella: Yes Human pathogen: No Interaction: Animal pathogen in Insecta; Animal symbiont in Heterorhabditidae (nematodes) Number of membranes: 2 Number of inteins:0
Statistics:	Number of PHOLL entries in the UniProt Knowledgebase: 4556 (743 in UniProtKB/Swiss-Prot + 3813 in UniProtKB/TrEMBL)

Genome structure:	Chromosome EMBL accession number BX470251 (circular; 5,688,987 bp) (download entry)
Reference(s):	[1] MEDLINE=22957627; PubMed=14528314; [ NCBI , EBI , Israel , Japan ] Duchaud E., Rusniok C., Frangeul L., Buchrieser C., Givaudan A., Taourit S., Bocs S., Boursaux-Eude C., Chandler M., Charles J.-F., Dassa E., Derose R., Derzelle S., Freyssinet G., Gaudriault S., Medigue C., Lanois A., Powell K., Siguier P., Vincent R., Wingate V., Zouine M., Glaser P., Boemare N., Danchin A., Kunst F. ; "The genome sequence of the entomopathogenic bacterium Photorhabdus luminescens."; Nat. Biotechnol. 21:1307-1313(2003).
Web links:	CBS: http://www.cbs.dtu.dk/services/GenomeAtlas/show-genus.php?kingdom=Bacteria&GLgenus=Photorhabdus&GLspecies=luminescens&GLstrain=laumondiiTTO1 Entrez Genome Project: http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=txid243265%5Borgn%5D ERIC: http://www.ericbrc.org/portal/eric/photorhabdusluminescenstto1 GenoList: http://genodb.pasteur.fr/cgi-bin/WebObjects/GenoList.woa/13/wa/goToTaxoRank?level=Photorhabdus%20luminescens%20laumondii%20TTO1 GIB (DDBJ): http://gib.genes.nig.ac.jp/single/index.php?spid=Plum_TT01 JVCI CMR: http://cmr.jcvi.org/tigr-scripts/CMR/GenomePage.cgi?database=ntpl01 Karyn's Genomes: http://www.ebi.ac.uk/2can/genomes/bacteria/Photorhabdus_luminescens.html PEDANT: http://pedant.gsf.de/pedant3htmlview/pedant3view?Method=analysis&Db=p3_p9605_Pho_lumin  EBI Proteome Analysis page

• Perform a BLAST search against all proteins from this proteome
  
  
• Download all UniProt Knowledgebase entries of this proteome
  • in UniProt Knowledgebase format
  • in FASTA format
  
  
• Retrieve set of characterized or identified proteins for this proteome
  
  
• Retrieve set of proteins with 3D structure for this proteome

Swiss Institute of Bioinformatics | Disclaimer