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HAMAP: Polaromonas naphthalenivorans (strain CJ2) complete proteome
General information

Species:  Polaromonas naphthalenivorans (strain CJ2)
Species code: POLNA
Taxonomy: Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas (TaxID: 365044) [NEWT/ NCBI]
Description: Polaromonas naphthalenivorans (strain CJ2) is a Gram-negative bacterium phylogenetically associated with the beta subdivision of the Proteobacteria. Polaromonas naphthalenivorans was isolated from naphthalene-contaminated, freshwater sediment. This organism is capable of aerobic degradation of naphthalene at temperatures of less than 20 degrees Celsius. Naphthalene is the simplest member of a class of important contaminants, the polycyclic aromatic hydrocarbons (PAHs). PAHs can be toxic and/or carcinogenic, therefore PAH contamination is of considerable concern. The ability of Polaromonas naphthalenivorans to degrade PAHs at low temperatures makes it a potential bioremediation agent.
Properties: Presence of flagella: No
Human pathogen: No
Interaction: No
Number of membranes: 2
Number of inteins:0
Statistics: Number of POLNA entries in the UniProt Knowledgebase: 4879 (312 in UniProtKB/Swiss-Prot + 4567 in UniProtKB/TrEMBL)


Genome(s) sequenced

Strain:    CJ2
Genome structure:
• Chromosome EMBL accession number CP000529 (circular; 4,410,291 bp) (download entry)
• Plasmid pPNAP01 EMBL accession number CP000530 (circular; 353,291 bp) (download entry)
• Plasmid pPNAP02 EMBL accession number CP000531 (circular; 190,172 bp) (download entry)
• Plasmid pPNAP03 EMBL accession number CP000532 (circular; 171,866 bp) (download entry)
• Plasmid pPNAP04 EMBL accession number CP000533 (circular; 143,747 bp) (download entry)
• Plasmid pPNAP05 EMBL accession number CP000534 (circular; 58,808 bp) (download entry)
• Plasmid pPNAP06 EMBL accession number CP000535 (circular; 21,611 bp) (download entry)
• Plasmid pPNAP07 EMBL accession number CP000536 (circular; 9,898 bp) (download entry)
• Plasmid pPNAP08 EMBL accession number CP000537 (circular; 6,459 bp) (download entry)
Reference(s):
[1] Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Sims D.R., Brettin T., Bruce D., Han C., Tapia R., Brainard J., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Kim E., Madsen E.L., Richardson P. ;
"Complete sequence of chromosome 1 of Polaromonas naphthalenivorans CJ2.";
Submitted (DEC-2006) to the EMBL/GenBank/DDBJ databases.
[2] Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Sims D.R., Brettin T., Bruce D., Han C., Tapia R., Brainard J., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Kim E., Madsen E.L., Richardson P. ;
"Complete sequence of plasmid pPNAP01 of Polaromonas naphthalenivorans CJ2.";
Submitted (DEC-2006) to the EMBL/GenBank/DDBJ databases.
[3] Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Sims D.R., Brettin T., Bruce D., Han C., Tapia R., Brainard J., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Kim E., Madsen E.L., Richardson P. ;
"Complete sequence of plasmid pPNAP02 of Polaromonas naphthalenivorans CJ2.";
Submitted (DEC-2006) to the EMBL/GenBank/DDBJ databases.
[4] Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Sims D.R., Brettin T., Bruce D., Han C., Tapia R., Brainard J., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Kim E., Madsen E.L., Richardson P. ;
"Complete sequence of plasmid pPNAP03 of Polaromonas naphthalenivorans CJ2.";
Submitted (DEC-2006) to the EMBL/GenBank/DDBJ databases.
[5] Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Sims D.R., Brettin T., Bruce D., Han C., Tapia R., Brainard J., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Kim E., Madsen E.L., Richardson P. ;
"Complete sequence of plasmid pPNAP04 of Polaromonas naphthalenivorans CJ2.";
Submitted (DEC-2006) to the EMBL/GenBank/DDBJ databases.
[6] Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Sims D.R., Brettin T., Bruce D., Han C., Tapia R., Brainard J., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Kim E., Madsen E.L., Richardson P. ;
"Complete sequence of plasmid pPNAP05 of Polaromonas naphthalenivorans CJ2.";
Submitted (DEC-2006) to the EMBL/GenBank/DDBJ databases.
[7] Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Sims D.R., Brettin T., Bruce D., Han C., Tapia R., Brainard J., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Kim E., Madsen E.L., Richardson P. ;
"Complete sequence of plasmid pPNAP06 of Polaromonas naphthalenivorans CJ2.";
Submitted (DEC-2006) to the EMBL/GenBank/DDBJ databases.
[8] Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Sims D.R., Brettin T., Bruce D., Han C., Tapia R., Brainard J., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Kim E., Madsen E.L., Richardson P. ;
"Complete sequence of plasmid pPNAP07 of Polaromonas naphthalenivorans CJ2.";
Submitted (DEC-2006) to the EMBL/GenBank/DDBJ databases.
[9] Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Sims D.R., Brettin T., Bruce D., Han C., Tapia R., Brainard J., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Kim E., Madsen E.L., Richardson P. ;
"Complete sequence of plasmid pPNAP08 of Polaromonas naphthalenivorans CJ2.";
Submitted (DEC-2006) to the EMBL/GenBank/DDBJ databases.
Web links:
Entrez Genome Project: http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=txid365044%5Borgn%5D
Genome Atlas: http://www.cbs.dtu.dk/services/gwBrowser/project.php?pid=13418
GIB (DDBJ): http://gib.genes.nig.ac.jp/single/index.php?spid=Pnap_CJ2
PEDANT: http://pedant.gsf.de/pedant3htmlview/pedant3view?Method=analysis&Db=p3_p13418_Pol_napht
 EBI Proteome Analysis page



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