Home Proteomes Families Hamap-Scan Documents Downloads Links
HAMAP: Polynucleobacter sp. (strain QLW-P1DMWA-1) complete proteome
General information

Species:  Polynucleobacter sp. (strain QLW-P1DMWA-1)
Species code: POLSQ
Taxonomy: Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Polynucleobacter (TaxID: 312153) [NEWT/ NCBI]
Description: Polynucleobacter sp. (strain QLW-P1DMWA-1) is a Gram-negative, aerobic bacterium that belongs to the beta subdivision of the Proteobacteria. The Polynucleobacter cluster contains four monophyletic, species-like subclusters. Strain QLW-P1DMWA-1 belongs to subcluster PnecC, which contains both free-living and endosymbiotic strains. QLW-P1DMWA-1 was isolated from fresh water and is a free-living bacterium. These free-living, heterotrophic clusters contribute up to 60% of total bacterial cell numbers in the pelagic zone of surface freshwater habitats and have also been detected in groundwater, therefore being extremely relevant in freshwater habitats. Comparison of this genome with genomes of the closely related endosymbiotic Polynucleobacter strains will provide unique insights into the evolutionary adaptations taking place during the early phase of endosymbiosis.
Properties: Presence of flagella: No
Human pathogen: No
Interaction: No
Number of membranes: 2
Number of inteins:0
Statistics: Number of POLSQ entries in the UniProt Knowledgebase: 2074 (244 in UniProtKB/Swiss-Prot + 1830 in UniProtKB/TrEMBL)


Genome(s) sequenced

Strain:    QLW-P1DMWA-1
Genome structure:
Chromosome EMBL accession number CP000655 (circular; 2,159,490 bp) (download entry)
Reference(s):
[1] Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., Dalin E., Tice H., Pitluck S., Meincke L., Brettin T., Bruce D., Detter J.C., Han C., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N., Poeckl M., Wu Q.L., Hahn M., Richardson P. ;
"Complete sequence of Polynucleobacter sp. QLW-P1DMWA-1.";
Submitted (APR-2007) to the EMBL/GenBank/DDBJ databases.
Web links:
Official genome site(s):
http://genome.jgi-psf.org/finished_microbes/pol_q/pol_q.home.html
Other web sites:
Entrez Genome Project: http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&cmd=ShowDetailView&TermToSearch=16679
Genome Atlas: http://www.cbs.dtu.dk/services/gwBrowser/project.php?pid=16679
GIB (DDBJ): http://gib.genes.nig.ac.jp/single/index.php?spid=Poly_QLWP1DMWA1
PEDANT: http://pedant.gsf.de/pedant3htmlview/pedant3view?Method=analysis&Db=p3_p16679_Pol_sp
 EBI Proteome Analysis page



Tools