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HAMAP: Pseudomonas mendocina (strain ymp) complete proteome
General information

Species:  Pseudomonas mendocina (strain ymp)
Species code: PSEMY
Taxonomy: Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas (TaxID: 399739) [NEWT/ NCBI]
Description: Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water which can also be found on the surfaces of plants and animals. They are are found in nature in a biofilm or in planktonic form. Pseudomonas are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. Typically they are plant pathogens, although several strains are pathogenic to humans. P.mendocina strain ymp, a strict aerobe, is a pentachlorophenol (PCP)-degrading bacterium isolated from PCP-contaminated soil. It is able to act as a bioremediation agent without the accumulation of inhibitory toxic compounds. On very rare occasions it has been recovered as a human pathogen (adapted from http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&cmd=ShowDetailView&TermToSearch=17457).
Properties: Presence of flagella: Yes
Human pathogen: Rarely
Interaction: No
Number of membranes: 2
Number of inteins:0
Statistics: Number of PSEMY entries in the UniProt Knowledgebase: 4563 (445 in UniProtKB/Swiss-Prot + 4118 in UniProtKB/TrEMBL)


Genome(s) sequenced

Strain:    ymp
Genome structure:
Chromosome EMBL accession number CP000680 (circular; 5,072,807 bp) (download entry)
Reference(s):
[1] Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., Dalin E., Tice H., Pitluck S., Kiss H., Brettin T., Detter J.C., Bruce D., Han C., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N., Hersman L., Dubois J., Maurice P., Richardson P. ;
"Complete sequence of Pseudomonas mendocina ymp.";
Submitted (APR-2007) to the EMBL/GenBank/DDBJ databases.
Web links:
Official genome site(s):
http://genome.jgi-psf.org/finished_microbes/pseme/pseme.info.html
Other web sites:
Entrez Genome Project: http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&cmd=ShowDetailView&TermToSearch=17457
GIB (DDBJ): http://gib.genes.nig.ac.jp/single/index.php?spid=Pmen_YMP
PseudoDB: http://xbase.bham.ac.uk/pseudodb/genome.pl?id=1244
 EBI Proteome Analysis page



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