HAMAP: Psychrobacter arcticus (strain DSM 17307 / 273-4) complete proteome
General information

Species:  Psychrobacter arcticus (strain DSM 17307 / 273-4)
Species code: PSYA2
Taxonomy: Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Moraxellaceae; Psychrobacter (TaxID: 259536) [NEWT/ NCBI]
Description: Psychrobacter arcticus is a Gram-negative, non-motile, coccoid rod that lives in extremely cold habitats, such as Antarctic ice, soil, and sediments, as well as in deep sea environments. The sequenced strain, 273-4, was isolated from a 20-40 thousand-year-old Siberian permafrost core.
Properties: Presence of flagella: No
Human pathogen: No
Interaction: No
Number of membranes: 2
Number of inteins:0
Statistics: Number of PSYA2 entries in the UniProt Knowledgebase: 2099 (331 in UniProtKB/Swiss-Prot + 1768 in UniProtKB/TrEMBL)


Genome(s) sequenced

Strain:    DSM 17307 / 273-4
Genome structure:
Chromosome EMBL accession number CP000082 (circular; 2,650,701 bp) (download entry)
Reference(s):
[1] PubMed=20154119; [ NCBI , EBI , Israel , Japan ]
Ayala-del-Rio H.L., Chain P.S., Grzymski J.J., Ponder M.A., Ivanova N., Bergholz P.W., Di Bartolo G., Hauser L., Land M., Bakermans C., Rodrigues D., Klappenbach J., Zarka D., Larimer F., Richardson P., Murray A., Thomashow M., Tiedje J.M. ;
"The genome sequence of Psychrobacter arcticus 273-4, a psychroactive Siberian permafrost bacterium, reveals mechanisms for adaptation to low-temperature growth.";
Appl. Environ. Microbiol. 76:2304-2312(2010).
Web links:
Official genome site(s):
http://genome.jgi-psf.org/finished_microbes/psy24/psy24.home.html
Other web sites:
CBS: http://www.cbs.dtu.dk/services/GenomeAtlas/show-genus.php?kingdom=Bacteria&GLgenus=Psychrobacter&GLspecies=arcticum&GLstrain=273-4
Entrez Genome Project: http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=txid259536%5Borgn%5D
GIB (DDBJ): http://gib.genes.nig.ac.jp/single/index.php?spid=Parc_273-4
JVCI CMR: http://cmr.jcvi.org/tigr-scripts/CMR/GenomePage.cgi?database=ntpa05
Karyn's Genomes: http://www.ebi.ac.uk/2can/genomes/bacteria/Psychrobacter_arcticum.html
PEDANT: http://pedant.gsf.de/pedant3htmlview/pedant3view?Method=analysis&Db=p3_p9633_Psy_arcti
 EBI Proteome Analysis page



Tools