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HAMAP: Pyrococcus abyssi (strain GE5 / Orsay) complete proteome
General information

Species:  Pyrococcus abyssi (strain GE5 / Orsay)
Species code: PYRAB
Taxonomy: Archaea; Euryarchaeota; Thermococci; Thermococcales; Thermococcaceae; Pyrococcus (TaxID: 272844) [NEWT/ NCBI]
Description: Anaerobic hyperthermophilic sulfur-dependent bacterium. Temperature range of this genus is 70 to 103 degrees Celsius. Organisms live in geothermally heated marine sediments worldwide.
Properties: Presence of flagella: Yes
Human pathogen: No
Interaction: No
Number of membranes: 1
Number of inteins: 10 in 10 different sequences
Statistics: Number of PYRAB entries in the UniProt Knowledgebase: 1786 (465 in UniProtKB/Swiss-Prot + 1321 in UniProtKB/TrEMBL)


Genome(s) sequenced

Strain:    GE5 / Orsay
Genome structure:
Chromosome EMBL accession number AL096836 (circular; 1,765,118 bp) (download entry)
Reference(s):
[1] MEDLINE=22511545; PubMed=12622808; [ NCBI , EBI , Israel , Japan ]
Cohen G.N., Barbe V., Flament D., Galperin M., Heilig R., Lecompte O., Poch O., Prieur D., Querellou J., Ripp R., Thierry J.-C., Van der Oost J., Weissenbach J., Zivanovic Y., Forterre P. ;
"An integrated analysis of the genome of the hyperthermophilic archaeon Pyrococcus abyssi.";
Mol. Microbiol. 47:1495-1512(2003).
Web links:
Official genome site(s):
http://www-archbac.u-psud.fr/genomes/newpab/newpab.html
http://www.genoscope.cns.fr/Pab/
Other web sites:
CBS: http://www.cbs.dtu.dk/services/GenomeAtlas/show-genus.php?kingdom=Archaea&GLgenus=Pyrococcus&GLspecies=abyssi&GLstrain=GE5
Entrez Genome Project: http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=txid272844%5Borgn%5D
GIB (DDBJ): http://gib.genes.nig.ac.jp/single/index.php?spid=Paby_ORSAY
JVCI CMR: http://cmr.jcvi.org/tigr-scripts/CMR/GenomePage.cgi?database=ntpa01
Karyn's Genomes: http://www.ebi.ac.uk/2can/genomes/archaea/Pyrococcus_abyssi.html
PEDANT: http://pedant.gsf.de/pedant3htmlview/pedant3view?Method=analysis&Db=p3_p179_Pyr_abyss
 EBI Proteome Analysis page



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