HAMAP: Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) complete proteome
General information

Species:  Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
Species code: PYRHO
Taxonomy: Archaea; Euryarchaeota; Thermococci; Thermococcales; Thermococcaceae; Pyrococcus (TaxID: 70601) [NEWT/ NCBI]
Description: Hyperthermophile found in the hot waters of the Okinawa Trench. Can grow at high temperatures, favoring a temperature of 98 degrees Celsius.
Properties: Presence of flagella: Yes
Human pathogen: No
Interaction: No
Number of membranes: 1
Number of inteins: 12 in 12 different sequences
Statistics: Number of PYRHO entries in the UniProt Knowledgebase: 2077 (475 in UniProtKB/Swiss-Prot + 1602 in UniProtKB/TrEMBL)


Genome(s) sequenced

Strain:    ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3
Genome structure:
Chromosome EMBL accession number BA000001 (circular; 1,738,505 bp) (download entry)
Reference(s):
[1] MEDLINE=98344137; PubMed=9679194; [ NCBI , EBI , Israel , Japan ]
Kawarabayasi Y., Sawada M., Horikawa H., Haikawa Y., Hino Y., Yamamoto S., Sekine M., Baba S., Kosugi H., Hosoyama A., Nagai Y., Sakai M., Ogura K., Otsuka R., Nakazawa H., Takamiya M., Ohfuku Y., Funahashi T., Tanaka T., Kudoh Y., Yamazaki J., Kushida N., Oguchi A., Aoki K., Yoshizawa T., Nakamura Y., Robb F.T., Horikoshi K., Masuchi Y., Shizuya H., Kikuchi H. ;
"Complete sequence and gene organization of the genome of a hyper-thermophilic archaebacterium, Pyrococcus horikoshii OT3.";
DNA Res. 5:55-76(1998).
Web links:
Official genome site(s):
http://www.bio.nite.go.jp/dogan/MicroTop?GENOME_ID=ot3_G1
Other web sites:
ARCHAIC db: http://www.aist.go.jp/RIODB/archaic/
CBS: http://www.cbs.dtu.dk/services/GenomeAtlas/show-genus.php?kingdom=Archaea&GLgenus=Pyrococcus&GLspecies=horikoshii&GLstrain=OT3
Entrez Genome Project: http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=txid70601%5Borgn%5D
GIB (DDBJ): http://gib.genes.nig.ac.jp/single/index.php?spid=Phor_OT3
JVCI CMR: http://cmr.jcvi.org/tigr-scripts/CMR/GenomePage.cgi?database=ntph01
Karyn's Genomes: http://www.ebi.ac.uk/2can/genomes/archaea/Pyrococcus_horikoshii.html
PEDANT: http://pedant.gsf.de/pedant3htmlview/pedant3view?Method=analysis&Db=p3_p207_Pyr_horik
 EBI Proteome Analysis page



Tools