Home Proteomes Families Hamap-Scan Documents Downloads Links
HAMAP: Pyrococcus kodakaraensis (strain ATCC BAA-918 / JCM 12380 / KOD1) (Thermococcus kodakaraensis (strain KOD1)) complete proteome
General information

Species:  Pyrococcus kodakaraensis (strain ATCC BAA-918 / JCM 12380 / KOD1) (Thermococcus kodakaraensis (strain KOD1))
Species code: PYRKO
Taxonomy: Archaea; Euryarchaeota; Thermococci; Thermococcales; Thermococcaceae; Thermococcus (TaxID: 69014) [NEWT/ NCBI]
Description: Pyrococcus kodakaraensis KOD1 (Thermococcus kodakaraensis KOD1), has been isolated from a solfatara on Kodakara Island, Kagoshima, Japan. It is a hyperthermophile organism, which grows between 65 and 100 degrees Celsius. The members of the Thermococcus genus are ubiquitously present in natural high-temperature environments, and are therefore considered to play a major role in the ecology and metabolic activity of microbial consortia within hot-water ecosystems.
Properties: Presence of flagella: Yes
Human pathogen: No
Interaction: No
Number of membranes: 1
Number of inteins: 11 in 11 different sequences
Statistics: Number of PYRKO entries in the UniProt Knowledgebase: 2301 (400 in UniProtKB/Swiss-Prot + 1901 in UniProtKB/TrEMBL)


Genome(s) sequenced

Strain:    ATCC BAA-918 / JCM 12380 / KOD1
Genome structure:
Chromosome EMBL accession number AP006878 (circular; 2,088,737 bp) (download entry)
Reference(s):
[1] PubMed=15710748; [ NCBI , EBI , Israel , Japan ]
Fukui T., Atomi H., Kanai T., Matsumi R., Fujiwara S., Imanaka T. ;
"Complete genome sequence of the hyperthermophilic archaeon Thermococcus kodakaraensis KOD1 and comparison with Pyrococcus genomes.";
Genome Res. 15:352-363(2005).
Web links:
Official genome site(s):
http://www.sbchem.kyoto-u.ac.jp/imanaka-lab/genome/index.html
Other web sites:
CBS: http://www.cbs.dtu.dk/services/GenomeAtlas/show-genus.php?kingdom=Archaea&GLgenus=Thermococcus&GLspecies=kodakaraensis&GLstrain=KOD1
Entrez Genome Project: http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=txid69014%5Borgn%5D
GIB (DDBJ): http://gib.genes.nig.ac.jp/single/index.php?spid=Tkod_KOD1
JVCI CMR: http://cmr.jcvi.org/tigr-scripts/CMR/GenomePage.cgi?database=nttk01
PEDANT: http://pedant.gsf.de/pedant3htmlview/pedant3view?Method=analysis&Db=p3_p13213_The_kodak
 EBI Proteome Analysis page



Tools