HAMAP: Ralstonia pickettii (strain 12J) complete proteome
General information

Species:  Ralstonia pickettii (strain 12J)
Species code: RALPJ
Taxonomy: Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia (TaxID: 402626) [NEWT/ NCBI]
Description: Ralstonia spp. are aerobic Gram-negative, oxidase positive, non-fermentative rods that are found in water and soil. They have been recently separated from Burkholderia spp. Ralstonia pickettii is emerging as an opportunistic nocosomial pathogen in both the hospital setting and from environmental sources. R. pickettii has been isolated from a wide variety of clinical specimens including blood, urine and cerebrospinal fluid. It has been identified in biofilm formation in plastic water piping as well as in ultrapure water in industrial systems, in the space shuttle water system and in laboratory-based ultrapure water systems. It also has considerable biodegradative properties, being able to degrade a number of toxic compounds such as aromatic hydrocarbons, chlorinated phenolic compounds and so on.

Strain 12J was isolated in 1999 from sediments from Torch Lake, a heavily copper-contaminated lake located in Michigan, USA. It is resistant to high concentrations of copper, zinc and cadmium (modified from PubMed 12545313 and 16337309).
Properties: Presence of flagella: No
Human pathogen: Yes
Interaction: Animal pathogen in Mammalia
Number of membranes: 2
Number of inteins:0
Statistics: Number of RALPJ entries in the UniProt Knowledgebase: 4890 (324 in UniProtKB/Swiss-Prot + 4566 in UniProtKB/TrEMBL)


Genome(s) sequenced

Strain:    12J
Genome structure:
• Chromosome 1 EMBL accession number CP001068 (circular; 3,942,557 bp) (download entry)
• Chromosome 2 EMBL accession number CP001069 (circular; 1,302,238 bp) (download entry)
• Plasmid pRPIC01 EMBL accession number CP001070 (circular; 80,934 bp) (download entry)
Reference(s):
[1] Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., Meincke L., Brettin T., Detter J.C., Han C., Kuske C.R., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N., Marsh T., Richardson P. ;
"Complete sequence of chromosome 1 of Ralstonia pickettii 12J.";
Submitted (MAY-2008) to the EMBL/GenBank/DDBJ databases.
[2] Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., Meincke L., Brettin T., Detter J.C., Han C., Kuske C.R., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N., Marsh T., Richardson P. ;
"Complete sequence of chromosome 2 of Ralstonia pickettii 12J.";
Submitted (MAY-2008) to the EMBL/GenBank/DDBJ databases.
[3] Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., Meincke L., Brettin T., Detter J.C., Han C., Kuske C.R., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N., Marsh T., Richardson P. ;
"Complete sequence of plasmid 1 of Ralstonia pickettii 12J.";
Submitted (MAY-2008) to the EMBL/GenBank/DDBJ databases.
Web links:
Official genome site(s):
http://genome.jgi-psf.org/finished_microbes/ralpi/ralpi.info.html
Other web sites:
Entrez Genome Project: http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&cmd=ShowDetailView&TermToSearch=17631
GIB (DDBJ): http://gib.genes.nig.ac.jp/single/index.php?spid=Rpic_12J
 EBI Proteome Analysis page



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