Home | Contact

Species code:	RHIEC
Taxonomy:	Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium (TaxID: 347834) [NEWT/ NCBI]
Description:	Rhizobium etli, a soil-dwelling, symbiotic nitrogen-fixing bacterium, is the main nodulator of Phaseolus vulgaris, the common bean. It contains one chromosome and 6 large plasmids, which contribute approximately one third of the genome. This strain is of considerable agronomic importance.
Properties:	Presence of flagella: Yes Human pathogen: No Interaction: Plant symbiont Number of membranes: 2 Number of inteins:0
Statistics:	Number of RHIEC entries in the UniProt Knowledgebase: 5921 (423 in UniProtKB/Swiss-Prot + 5498 in UniProtKB/TrEMBL)

Genome structure:	• Chromosome EMBL accession number CP000133 (circular; 4,381,608 bp) (download entry) • Plasmid p42a EMBL accession number CP000134 (circular; 194,229 bp) (download entry) • Plasmid p42b EMBL accession number CP000135 (circular; 184,338 bp) (download entry) • Plasmid p42c EMBL accession number CP000136 (circular; 250,948 bp) (download entry) • Plasmid sym p42d EMBL accession number U80928 (circular; 371,254 bp) (download entry) • Plasmid p42e EMBL accession number CP000137 (circular; 505,334 bp) (download entry) • Plasmid p42f EMBL accession number CP000138 (circular; 642,517 bp) (download entry)
Reference(s):	[1] PubMed=16505379; [ NCBI , EBI , Israel , Japan ] Gonzalez V., Santamaria R.I., Bustos P., Hernandez-Gonzalez I., Medrano-Soto A., Moreno-Hagelsieb G., Janga S.C., Ramirez M.A., Jimenez-Jacinto V., Collado-Vides J., Davila G. ; "The partitioned Rhizobium etli genome: genetic and metabolic redundancy in seven interacting replicons."; Proc. Natl. Acad. Sci. U.S.A. 103:3834-3839(2006). [2] MEDLINE=22686550; PubMed=12801410; [ NCBI , EBI , Israel , Japan ] Gonzalez V., Bustos P., Ramirez-Romero M.A., Medrano-Soto A., Salgado H., Hernandez-Gonzalez I., Hernandez-Celis J.C., Quintero V., Moreno-Hagelsieb G., Girard L., Rodriguez O., Flores M., Cevallos M.A., Collado-Vides J., Romero D., Davila G. ; "The mosaic structure of the symbiotic plasmid of Rhizobium etli CFN42 and its relation to other symbiotic genome compartments."; Genome Biol. 4:R36.1-R36.13(2003).
Web links:	Official genome site(s): http://www.cifn.unam.mx/retlidb/ Other web sites: CBS: http://www.cbs.dtu.dk/services/GenomeAtlas/show-genus.php?kingdom=Bacteria&GLgenus=Rhizobium&GLspecies=etli&GLsupStrain=CFN42 Entrez Genome Project: http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=txid347834%5Borgn%5D GIB (DDBJ): http://gib.genes.nig.ac.jp/single/index.php?spid=Retl_CFN42 PEDANT: http://pedant.gsf.de/pedant3htmlview/pedant3view?Method=analysis&Db=p3_p13932_Rhi_etli RhizoDB: http://xbase.bham.ac.uk/rhizodb/genome.pl?id=1259  EBI Proteome Analysis page

• Perform a BLAST search against all proteins from this proteome
  
  
• Download all UniProt Knowledgebase entries of this proteome
  • in UniProt Knowledgebase format
  • in FASTA format
  
  
• Retrieve set of characterized or identified proteins for this proteome
  
  
• Retrieve set of proteins with 3D structure for this proteome

Swiss Institute of Bioinformatics | Disclaimer