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HAMAP: Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) complete proteome
General information

Species:  Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118)
Species code: RHOFD
Taxonomy: Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Albidiferax (TaxID: 338969) [NEWT/ NCBI]
Description: Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) is a Gram-negative, motile, short rod with a single polar flagellum. It grows between pH 6.7 and 7.1, with a temperature range of 4-30 degrees C. The optimal growth temperature is 25 degrees Celsius. Electron donors utilized with Fe(III) as the sole electron acceptor included acetate, lactate, malate, propionate, pyruvate, succinate and benzoate. None of the compounds tested was fermented. Unlike other species in this genus, Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) seems not to be a phototroph and not to ferment fructose.
Properties: Presence of flagella: Yes
Human pathogen: No
Interaction: No
Number of membranes: 2
Number of inteins:0
Statistics: Number of RHOFD entries in the UniProt Knowledgebase: 4401 (371 in UniProtKB/Swiss-Prot + 4030 in UniProtKB/TrEMBL)


Genome(s) sequenced

Strain:    DSM 15236 / ATCC BAA-621 / T118
Genome structure:
• Chromosome EMBL accession number CP000267 (circular; 4,712,337 bp) (download entry)
• Plasmid pDSM15236 EMBL accession number CP000268 (circular; 257,447 bp) (download entry)
Reference(s):
[1] Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Pitluck S., Brettin T., Bruce D., Han C., Tapia R., Gilna P., Kiss H., Schmutz J., Larimer F., Land M., Kyrpides N., Ivanova N., Richardson P. ;
"Complete sequence of chromosome of Rhodoferax ferrireducens DSM 15236.";
Submitted (FEB-2006) to the EMBL/GenBank/DDBJ databases.
[2] Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Pitluck S., Brettin T., Bruce D., Han C., Tapia R., Gilna P., Kiss H., Schmutz J., Larimer F., Land M., Kyrpides N., Ivanova N., Richardson P. ;
"Complete sequence of plasmid 1 of Rhodoferax ferrireducens DSM 15236.";
Submitted (FEB-2006) to the EMBL/GenBank/DDBJ databases.
Web links:
Official genome site(s):
http://genome.jgi-psf.org/finished_microbes/rhofe/rhofe.home.html
Other web sites:
CBS: http://www.cbs.dtu.dk/services/GenomeAtlas/show-genus.php?kingdom=Bacteria&GLgenus=Rhodoferax&GLspecies=ferrireducens&GLsupStrain=DSM15236
Entrez Genome Project: http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=txid338969%5Borgn%5D
GIB (DDBJ): http://gib.genes.nig.ac.jp/single/index.php?spid=Rfer_DSM15236
PEDANT: http://pedant.gsf.de/pedant3htmlview/pedant3view?Method=analysis&Db=p3_p13908_Rho_ferri
 EBI Proteome Analysis page



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