HAMAP: Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009) complete proteome
General information

Species:  Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009)
Species code: RHOPA
Taxonomy: Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas (TaxID: 258594) [NEWT/ NCBI]
Description: Rhodopseudomonas palustris are phototrophic, purple non-sulfur bacteria commonly found in soils and water. They fix carbon dioxide and nitrogen, produce hydrogen, and degrade diverse biomass-associated aromatic compounds under anaerobic (phototrophic) and aerobic (heterotrophic) conditions. Against the background of general metabolic versatility of the R. palustris species there is considerable strain-to-strain diversity.
Properties: Presence of flagella: Yes
Human pathogen: No
Interaction: No
Number of membranes: 2
Number of inteins:0
Statistics: Number of RHOPA entries in the UniProt Knowledgebase: 4811 (462 in UniProtKB/Swiss-Prot + 4349 in UniProtKB/TrEMBL)


Genome(s) sequenced

Strain:    ATCC BAA-98 / CGA009
Genome structure:
• Chromosome EMBL accession number BX571963 (circular; 5,459,213 bp) (download entry)
• Plasmid pRPA EMBL accession number BX571964 (circular; 8,427 bp) (download entry)
Reference(s):
[1] PubMed=14704707; [ NCBI , EBI , Israel , Japan ]
Larimer F.W., Chain P., Hauser L., Lamerdin J.E., Malfatti S., Do L., Land M.L., Pelletier D.A., Beatty J.T., Lang A.S., Tabita F.R., Gibson J.L., Hanson T.E., Bobst C., Torres y Torres J.L., Peres C., Harrison F.H., Gibson J., Harwood C.S. ;
"Complete genome sequence of the metabolically versatile photosynthetic bacterium Rhodopseudomonas palustris.";
Nat. Biotechnol. 22:55-61(2004).
Web links:
CyanoBase: http://bacteria.kazusa.or.jp/cyanobase/Rhodopseudomonas/index.html
Entrez Genome Project: http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=txid258594%5Borgn%5D
Genome Atlas: http://www.cbs.dtu.dk/services/gwBrowser/project.php?pid=57
GIB (DDBJ): http://gib.genes.nig.ac.jp/single/index.php?spid=Rpal_CGA009
JVCI CMR: http://cmr.jcvi.org/tigr-scripts/CMR/GenomePage.cgi?database=ntrp02
Karyn's Genomes: http://www.ebi.ac.uk/2can/genomes/bacteria/Rhodopseudomonas_palustris.html
PEDANT: http://pedant.gsf.de/pedant3htmlview/pedant3view?Method=analysis&Db=p3_p15750_Rho_palus
RhizoDB: http://xbase.bham.ac.uk/rhizodb/genome.pl?id=1270
 EBI Proteome Analysis page



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