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HAMAP: Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) complete proteome
General information

Species:  Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158)
Species code: RHOS4
Taxonomy: Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter (TaxID: 272943) [NEWT/ NCBI]
Description: Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) is an alphaproteobacterium. It harbors 2 chromosomes and five plasmids. It possesses an extensive range of energy acquiring mechanisms including photosynthesis, lithotrophy, aerobic and anaerobic respiration. It can also fix molecular nitrogen, synthesize important tetrapyrroles, chlorophylls, heme, and vitamin B12. It has also been shown to detoxify a number of metal oxides and oxyanions and is the subject of ongoing studies on bioremediation and is the first free living bacterium known to utilize the regulatory systems associated with quorum-sensing.
Properties: Presence of flagella: Yes
Human pathogen: No
Interaction: No
Number of membranes: 2
Number of inteins:0
Statistics: Number of RHOS4 entries in the UniProt Knowledgebase: 4124 (448 in UniProtKB/Swiss-Prot + 3676 in UniProtKB/TrEMBL)


Genome(s) sequenced

Strain:    ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158
Genome structure:
• Chromosome 1 EMBL accession number CP000143 (circular; 3,188,609 bp) (download entry)
• Chromosome 2 EMBL accession number CP000144 (circular; 943,016 bp) (download entry)
• Plasmid pRS241b EMBL accession number CP000145 (circular; 114,178 bp) (download entry)
• Plasmid pRS241c EMBL accession number CP000146 (circular; 105,284 bp) (download entry)
• Plasmid pRS241d EMBL accession number CP000147 (circular; 100,828 bp) (download entry)
Reference(s):
[1] Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina T., Hammon N., Israni S., Pitluck S., Richardson P., Mackenzie C., Choudhary M., Larimer F., Hauser L.J., Land M., Donohue T.J., Kaplan S. ;
"Complete sequence of chromosome 1 of Rhodobacter sphaeroides 2.4.1.";
Submitted (SEP-2005) to the EMBL/GenBank/DDBJ databases.
[2] Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina T., Hammon N., Israni S., Pitluck S., Richardson P., Mackenzie C., Choudhary M., Larimer F., Hauser L.J., Land M., Donohue T.J., Kaplan S. ;
"Complete sequence of chromosome 2 of Rhodobacter sphaeroides 2.4.1.";
Submitted (SEP-2005) to the EMBL/GenBank/DDBJ databases.
[3] Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina T., Hammon N., Israni S., Pitluck S., Richardson P., Mackenzie C., Choudhary M., Larimer F., Hauser L.J., Land M., Donohue T.J., Kaplan S. ;
"Complete sequence of plasmid B of Rhodobacter sphaeroides 2.4.1.";
Submitted (SEP-2005) to the EMBL/GenBank/DDBJ databases.
[4] Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina T., Hammon N., Israni S., Pitluck S., Richardson P., Mackenzie C., Choudhary M., Larimer F., Hauser L.J., Land M., Donohue T.J., Kaplan S. ;
"Complete sequence of plasmid C of Rhodobacter sphaeroides 2.4.1.";
Submitted (SEP-2005) to the EMBL/GenBank/DDBJ databases.
[5] Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina T., Hammon N., Israni S., Pitluck S., Richardson P., Mackenzie C., Choudhary M., Larimer F., Hauser L.J., Land M., Donohue T.J., Kaplan S. ;
"Complete sequence of plasmid D of Rhodobacter sphaeroides 2.4.1.";
Submitted (SEP-2005) to the EMBL/GenBank/DDBJ databases.
Web links:
Official genome site(s):
http://www.rhodobacter.org/
http://genome.jgi-psf.org/finished_microbes/rhosp/rhosp.home.html
Other web sites:
Entrez Genome Project: http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=txid272943%5Borgn%5D
Genome Atlas: http://www.cbs.dtu.dk/services/gwBrowser/project.php?pid=56
GIB (DDBJ): http://gib.genes.nig.ac.jp/single/index.php?spid=Rsph_241
JVCI CMR: http://cmr.jcvi.org/tigr-scripts/CMR/GenomePage.cgi?database=ntrs03
PEDANT: http://pedant.gsf.de/pedant3htmlview/pedant3view?Method=analysis&Db=p3_p56_Rho_sphae
 EBI Proteome Analysis page



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