HAMAP: Salinibacter ruber (strain DSM 13855 / M31) complete proteome
General information

Species:  Salinibacter ruber (strain DSM 13855 / M31)
Species code: SALRD
Taxonomy: Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter (TaxID: 309807) [NEWT/ NCBI]
Description: Salinibacter ruber DSM 13855 is Gram-negative, extremely halophilic, aerobic, heterotrophic, motile and red-pigmented (high proportion of carotenoids in its membrane) bacterium belonging to the Cytophaga-Flexibacter-Bacteroides group. This bacterium coexists in significant colonies with halophilic archaea under saline conditions. In contrast to other bacteria they do not regulate their intracellular salt conditions through proton pumps, but instead their protein makeup has adapted to be functional under high ionic conditions.
Properties: Presence of flagella: Yes
Human pathogen: No
Interaction: No
Number of membranes: 2
Number of inteins:0
Statistics: Number of SALRD entries in the UniProt Knowledgebase: 2812 (247 in UniProtKB/Swiss-Prot + 2565 in UniProtKB/TrEMBL)


Genome(s) sequenced

Strain:    DSM 13855 / M31
Genome structure:
• Chromosome EMBL accession number CP000159 (circular; 3,551,823 bp) (download entry)
• Plasmid pSR35 EMBL accession number CP000160 (circular; 35,505 bp) (download entry)
Reference(s):
[1] PubMed=16330755; [ NCBI , EBI , Israel , Japan ]
Mongodin E.F., Nelson K.E., Daugherty S., DeBoy R.T., Wister J., Khouri H., Weidman J., Walsh D.A., Papke R.T., Sanchez Perez G., Sharma A.K., Nesbo C.L., MacLeod D., Bapteste E., Doolittle W.F., Charlebois R.L., Legault B., Rodriguez-Valera F. ;
"The genome of Salinibacter ruber: convergence and gene exchange among hyperhalophilic bacteria and archaea.";
Proc. Natl. Acad. Sci. U.S.A. 102:18147-18152(2005).
Web links:
CBS: http://www.cbs.dtu.dk/services/GenomeAtlas/show-genus.php?kingdom=Bacteria&GLgenus=Salinibacter&GLspecies=ruber&GLstrain=DSM13855
Entrez Genome Project: http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=txid309807%5Borgn%5D
GIB (DDBJ): http://gib.genes.nig.ac.jp/single/index.php?spid=Srub_DSM13855
JVCI CMR: http://cmr.jcvi.org/tigr-scripts/CMR/GenomePage.cgi?database=gsr
PEDANT: http://pedant.gsf.de/pedant3htmlview/pedant3view?Method=analysis&Db=p3_p16159_Sal_ruber
 EBI Proteome Analysis page



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