HAMAP: Salmonella typhimurium complete proteome
General information

Species:  Salmonella typhimurium
Species code: SALTY
Taxonomy: Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Salmonella (TaxID: 90371) [NEWT/ NCBI]
Description: S.typhimurium is a leading cause of human gastroenteritis and is used as a mouse model of human typhoid fever. The incidence of non-typhoid salmonellosis is increasing worldwide, causing millions of infections and many deaths in the human populations each year.
Properties: Presence of flagella: Yes
Human pathogen: No
Interaction: Animal pathogen in Mammalia; Avirulent strain
Number of membranes: 2
Number of inteins:0
Statistics: Number of SALTY entries in the UniProt Knowledgebase: 4533 (1753 in UniProtKB/Swiss-Prot + 2780 in UniProtKB/TrEMBL)


Genome(s) sequenced

Strain:    LT2 / SGSC1412 / ATCC 700720
Genome structure:
• Chromosome EMBL accession number AE006468 (circular; 4,857,432 bp) (download entry)
• Plasmid pSLT EMBL accession number AE006471 (circular; 93,939 bp) (download entry)
Reference(s):
[1] MEDLINE=21534948; PubMed=11677609; [ NCBI , EBI , Israel , Japan ]
McClelland M., Sanderson K.E., Spieth J., Clifton S.W., Latreille P., Courtney L., Porwollik S., Ali J., Dante M., Du F., Hou S., Layman D., Leonard S., Nguyen C., Scott K., Holmes A., Grewal N., Mulvaney E., Ryan E., Sun H., Florea L., Miller W., Stoneking T., Nhan M., Waterston R., Wilson R.K. ;
"Complete genome sequence of Salmonella enterica serovar Typhimurium LT2.";
Nature 413:852-856(2001).
Web links:
Entrez Genome Project: http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=txid99287%5Borgn%5D
ERIC: http://www.ericbrc.org/portal/eric/salmonellatyphimuriumlt2
Genome Atlas: http://www.cbs.dtu.dk/services/gwBrowser/precalc/project.php?pid=241
GIB (DDBJ): http://gib.genes.nig.ac.jp/single/index.php?spid=Styp_LT2
JVCI CMR: http://cmr.jcvi.org/tigr-scripts/CMR/GenomePage.cgi?database=ntst01
Karyn's Genomes: http://www.ebi.ac.uk/2can/genomes/bacteria/Salmonella_typhimurium.html
PATRIC: http://patricbrc.vbi.vt.edu/portal/portal/patric/Genome?cType=genome&cId=20916
PEDANT: http://pedant.gsf.de/pedant3htmlview/pedant3view?Method=analysis&Db=p3_p241_Sal_typhi
 EBI Proteome Analysis page



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