HAMAP: Shewanella sp. (strain W3-18-1) complete proteome
General information

Species:  Shewanella sp. (strain W3-18-1)
Species code: SHESW
Taxonomy: Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Shewanellaceae; Shewanella (TaxID: 351745) [NEWT/ NCBI]
Description: Shewanella are facultatively anaerobic, Gram-negative bacteria, motile by polar flagella, rod-like, and generally associated with aquatic or marine environments. . They are capable of using a variety of compounds as electron acceptors, including oxygen, iron, manganese, uranium, nitrate, nitrite, fumarate, to name but a few. This ability makes Shewanella important for bioremediation of contaminated metals and radioactive wastes. The genus Shewanella comprises 36 recognized and hundreds of uncharacterized cultivable species.

Originally described as Shewanella putrefaciens, this strain was isolated from Pacific Ocean marine sediments at 630 m depth. It has a novel integrating conjugative element of approximately 110 kb inserted into the prfC gene. This element encodes a variety of efflux pumps which confer resistance to heavy metals and possibly also to antibiotics.
Properties: Presence of flagella: Yes
Human pathogen: No
Interaction: No
Number of membranes: 2
Number of inteins:0
Statistics: Number of SHESW entries in the UniProt Knowledgebase: 4007 (437 in UniProtKB/Swiss-Prot + 3570 in UniProtKB/TrEMBL)


Genome(s) sequenced

Strain:    W3-18-1
Genome structure:
Chromosome EMBL accession number CP000503 (circular; 4,708,380 bp) (download entry)
Reference(s):
[1] Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Lykidis A., Tiedje J., Richardson P. ;
"Complete sequence of Shewanella sp. W3-18-1.";
Submitted (DEC-2006) to the EMBL/GenBank/DDBJ databases.
Web links:
Official genome site(s):
http://genome.jgi-psf.org/finished_microbes/she_w/she_w.home.html
Other web sites:
Entrez Genome Project: http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=txid351745%5Borgn%5D
GIB (DDBJ): http://gib.genes.nig.ac.jp/single/index.php?spid=Shew_W3181
PEDANT: http://pedant.gsf.de/pedant3htmlview/pedant3view?Method=analysis&Db=p3_p13902_She_W3181
 EBI Proteome Analysis page



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