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HAMAP: Shewanella woodyi (strain ATCC 51908 / MS32) complete proteome
General information

Species:  Shewanella woodyi (strain ATCC 51908 / MS32)
Species code: SHEWM
Taxonomy: Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Shewanellaceae; Shewanella (TaxID: 392500) [NEWT/ NCBI]
Description: Shewanella woodyi (strain ATCC 51908 / MS32) was originally isolated from the squid, sediment and water of the Alboran Sea (mixture of Atlantic and Mediterranean Sea) as a bioluminescent bacterium. Like its relative S. sediminis , S. woodyi was also able to degrade RDX with relatively lower activity. Genome sequencing of S. woodyi and S. sediminis as a pair will help understand how species of Shewanella degraded RDX. Shewanella are ubiquitous in marine environment and play important role in global carbon and nitrogen cycles. S. woodyi and S. sediminis are two bacteria from different geological regions of marine environment and have many complementary properties in carbon and nitrogen metabolism. Genome sequencing and comparative genomics of multiple strains of Shewanella will be used to unlock the genetic processes involved in carbon, nitrogen cycles and biodegradation of pollutants in marine environment. It is used in comparative genomics and in the carbon and nitrogen cycle in the marine environment. It's growth is at low temperature.
Properties: Presence of flagella: Yes
Interaction: No
Number of membranes: 2
Number of inteins:0
Statistics: Number of SHEWM entries in the UniProt Knowledgebase: 4865 (407 in UniProtKB/Swiss-Prot + 4458 in UniProtKB/TrEMBL)


Genome(s) sequenced

Strain:    ATCC 51908 / MS32
Genome structure:
Chromosome EMBL accession number CP000961 (circular; 5,935,403 bp) (download entry)
Reference(s):
[1] Copeland A., Lucas S., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., Sims D., Brettin T., Detter J.C., Han C., Kuske C.R., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Lykidis A., Zhao J.-S., Richardson P. ;
"Complete sequence of Shewanella woodyi ATCC 51908.";
Submitted (FEB-2008) to the EMBL/GenBank/DDBJ databases.
Web links:
Official genome site(s):
http://genome.jgi-psf.org/finished_microbes/shewo/shewo.home.html
Other web sites:
Entrez Genome Project: http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&cmd=ShowDetailView&TermToSearch=17455
Genome Atlas: http://www.cbs.dtu.dk/services/gwBrowser/project.php?pid=17455
GIB (DDBJ): http://gib.genes.nig.ac.jp/single/index.php?spid=Swoo_ATCC51908
PEDANT: http://pedant.gsf.de/pedant3htmlview/pedant3view?Method=analysis&Db=p3_p17455_She_woody
 EBI Proteome Analysis page



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