HAMAP: Solibacter usitatus (strain Ellin6076) complete proteome
General information

Species:  Solibacter usitatus (strain Ellin6076)
Species code: SOLUE
Taxonomy: Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter (TaxID: 234267) [NEWT/ NCBI]
Description: Solibacter usitatus (strain Ellin6076) is an aerobic, mesophilic, chemo-organotroph Gram-negative bacterium isolated from soil in ryegrass grass/clover pasture in Australia. S. usitatus is able to use a variety of carbon sources that span simple sugars to more complex substrates such as hemicellulose, cellulose, and chitin. It is capable of nitrate and nitrite reduction, but not N2 fixation or denitrification. It plays an important role in iron redox reactions and important contributions to the terrestrial carbon cycle. The presence of cellulose synthesis genes and a large class of novel high-molecular-weight excreted proteins suggests potential traits for desiccation resistance, biofilm formation, and/or contribution to soil structure. (adapated from PMID: 19201974).
Properties: Presence of flagella: Yes
Human pathogen: No
Interaction: No
Number of membranes: 2
Number of inteins:0
Statistics: Number of SOLUE entries in the UniProt Knowledgebase: 7761 (242 in UniProtKB/Swiss-Prot + 7519 in UniProtKB/TrEMBL)


Genome(s) sequenced

Strain:    Ellin6076
Genome structure:
Chromosome EMBL accession number CP000473 (circular; 9,965,640 bp) (download entry)
Reference(s):
[1] PubMed=19201974; [ NCBI , EBI , Israel , Japan ]
Ward N.L., Challacombe J.F., Janssen P.H., Henrissat B., Coutinho P.M., Wu M., Xie G., Haft D.H., Sait M., Badger J., Barabote R.D., Bradley B., Brettin T.S., Brinkac L.M., Bruce D., Creasy T., Daugherty S.C., Davidsen T.M., DeBoy R.T., Detter J.C., Dodson R.J., Durkin A.S., Ganapathy A., Gwinn-Giglio M., Han C.S., Khouri H., Kiss H., Kothari S.P., Madupu R., Nelson K.E., Nelson W.C., Paulsen I., Penn K., Ren Q., Rosovitz M.J., Selengut J.D., Shrivastava S., Sullivan S.A., Tapia R., Thompson L.S., Watkins K.L., Yang Q., Yu C., Zafar N., Zhou L., Kuske C.R. ;
"Three genomes from the phylum Acidobacteria provide insight into the lifestyles of these microorganisms in soils.";
Appl. Environ. Microbiol. 75:2046-2056(2009).
Web links:
Entrez Genome Project: http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=txid234267%5Borgn%5D
Genome Atlas: http://www.cbs.dtu.dk/services/gwBrowser/project.php?pid=12638
GIB (DDBJ): http://gib.genes.nig.ac.jp/single/index.php?spid=Susi_ELLIN6076
PEDANT: http://pedant.gsf.de/pedant3htmlview/pedant3view?Method=analysis&Db=p3_p12638_Sol_usita
 EBI Proteome Analysis page



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