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HAMAP: Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) complete proteome
General information

Species:  Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1)
Species code: STAMF
Taxonomy: Archaea; Crenarchaeota; Thermoprotei; Desulfurococcales; Desulfurococcaceae; Staphylothermus (TaxID: 399550) [NEWT/ NCBI]
Description: Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) is a strictly anaerobic, hyperthermophilic archaeon phylogenetically associated with the kingdom Crenarchaeota. This organism was isolated from hydrothermal marine sediment from Vulcano Island in Italy. Staphylothermus marinus is heterotrophic and requires sulfur, which is reduced to H2S, for growth. It is slightly irregular coccus, which exhibits optimal growth at 92 degrees Celsius.
Properties: Presence of flagella: No
Human pathogen: No
Interaction: No
Number of membranes: 1
Number of inteins: 2 in 2 different sequences
Statistics: Number of STAMF entries in the UniProt Knowledgebase: 1570 (120 in UniProtKB/Swiss-Prot + 1450 in UniProtKB/TrEMBL)


Genome(s) sequenced

Strain:    ATCC 43588 / DSM 3639 / F1
Genome structure:
Chromosome EMBL accession number CP000575 (circular; 1,570,485 bp) (download entry)
Reference(s):
[1] PubMed=19341479; [ NCBI , EBI , Israel , Japan ]
Anderson I.J., Dharmarajan L., Rodriguez J., Hooper S., Porat I., Ulrich L.E., Elkins J.G., Mavromatis K., Sun H., Land M., Lapidus A., Lucas S., Barry K., Huber H., Zhulin I.B., Whitman W.B., Mukhopadhyay B., Woese C., Bristow J., Kyrpides N. ;
"The complete genome sequence of Staphylothermus marinus reveals differences in sulfur metabolism among heterotrophic Crenarchaeota.";
BMC Genomics 10:145-145(2009).
[2] Anderson I.J., Sun H., Lapidus A., Copeland A., Glavina Del Rio T., Tice H., Dalin E., Lucas S., Barry K., Land M., Richardson P., Huber H., Kyrpides N.C. ;
"Complete genome sequence of Staphylothermus marinus Stetter and Fiala 1986 type strain F1.";
Stand. Genomic Sci. 1:183-188(2009).
Web links:
Official genome site(s):
http://genome.jgi-psf.org/finished_microbes/stama/stama.home.html
Other web sites:
Entrez Genome Project: http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=txid399550%5Borgn%5D
Genome Atlas: http://www.cbs.dtu.dk/services/gwBrowser/project.php?pid=17449
GIB (DDBJ): http://gib.genes.nig.ac.jp/single/index.php?spid=Smar_F1
PEDANT: http://pedant.gsf.de/pedant3htmlview/pedant3view?Method=analysis&Db=p3_p17449_Sta_marin
 EBI Proteome Analysis page



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