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HAMAP: Stenotrophomonas maltophilia (strain R551-3) complete proteome
General information

Species:  Stenotrophomonas maltophilia (strain R551-3)
Species code: STRM5
Taxonomy: Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group (TaxID: 391008) [NEWT/ NCBI]
Description: The Xanthomonadaceae are a family of Gram negative bacteria belonging to the order Xanthomonadales in the gammaproteobacteria. They are typically characterized as environmental organisms and are found in soil and water, as well as plant tissues. Many Xanthomonadaceae, especially species from the genera Xanthomonas and Xylella, cause plant diseases. Only one, Stenotrophomonas maltophilia, has isolates known to be opportunistic human pathogens.

Stenotrophomonas maltophilia (strain R551-3) is aerobic endophitic bacterium isolated from Populus trichocarpa x deltoides cv. "Hoogvorst". It represents the second most commonly found endophytic species in poplar. Identical bacteria were isolated from the poplar rhizosphere, root and stem. S. maltophilia 551-3 is closely related to S. maltophilia K279a (based on 16S rDNA sequence). A comparison between the two genome sequences should allow identifying gene functions that are a prerequisite for the endophytic behavior of S. maltophilia R551-3 and its successful colonization of poplar. S. maltophilia represents a bacterial species of potential agronomic importance. Traits of S. maltophilia associated with biocontrol mechanisms include antibiotic production, extracellular enzyme activities such as protease and chitinase, and rhizosphere colonization potential (adapted from http://genome.jgi-psf.org/stema/stema.home.html).
Properties: Presence of flagella: Yes
Human pathogen: No
Interaction: Plant endophyte
Number of membranes: 2
Number of inteins:0
Statistics: Number of STRM5 entries in the UniProt Knowledgebase: 4026 (313 in UniProtKB/Swiss-Prot + 3713 in UniProtKB/TrEMBL)


Genome(s) sequenced

Strain:    R551-3
Genome structure:
Chromosome EMBL accession number CP001111 (circular; 4,573,969 bp) (download entry)
Reference(s):
[1] Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., Vergez L., Lang D., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N., Taghavi S., Monchy S., Newman L., Vangronsveld J., van der Lelie D., Richardson P. ;
"Complete sequence of Stenotrophomonas maltophilia R551-3.";
Submitted (JUN-2008) to the EMBL/GenBank/DDBJ databases.
Web links:
Official genome site(s):
http://genome.jgi-psf.org/stema/stema.home.html
Other web sites:
GIB (DDBJ): http://gib.genes.nig.ac.jp/single/index.php?spid=Smal_R5513
PEDANT: http://pedant.gsf.de/pedant3htmlview/pedant3view?Method=analysis&Db=p3_p17107_Ste_malto
 EBI Proteome Analysis page



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