Home | Contact

Species code:	VIBVU
Taxonomy:	Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio (TaxID: 672) [NEWT/ NCBI]
Description:	Vibrio vulnificus causes primary septicemia and wound infections. It was first recognized as a causative agent of a fatal septicemic infection in 1982. Septicemia occurs following ingestion of raw seafood preferentially in subjects having underlying diseases such as liver cirrhosis, hepatitis, hemochromatosis, or diabetes mellitus. Strain CMCP6 is a clinical isolate from Chonnam National University Hospital, Republic of Korea. It was partially resequenced and reannotated in 2011, see PMID 21245845.
Properties:	Presence of flagella: Yes Human pathogen: Yes Interaction: Animal pathogen in Mammalia Number of membranes: 2 Number of inteins:0
Statistics:	Number of VIBVU entries in the UniProt Knowledgebase: 4417 (732 in UniProtKB/Swiss-Prot + 3685 in UniProtKB/TrEMBL)

Genome structure:	• Chromosome 1 EMBL accession number AE016795 (circular; 3,281,866 bp) (download entry) • Chromosome 2 EMBL accession number AE016796 (circular; 1,844,830 bp) (download entry)
Reference(s):	[1] Rhee J.H., Kim S.Y., Chung S.S., Kim J.J., Moon Y.H., Jeong H., Choy H.E. ; "Complete genome sequence of Vibrio vulnificus CMCP6."; Submitted (DEC-2002) to the EMBL/GenBank/DDBJ databases.
Web links:	CBS: http://www.cbs.dtu.dk/services/GenomeAtlas/show-genus.php?kingdom=Bacteria&GLgenus=Vibrio&GLspecies=vulnificus&GLstrain=CMCP6 Entrez Genome Project: http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=txid216895%5Borgn%5D GIB (DDBJ): http://gib.genes.nig.ac.jp/single/index.php?spid=Vvul_CMCP6 JVCI CMR: http://cmr.jcvi.org/tigr-scripts/CMR/GenomePage.cgi?database=ntvv01 Karyn's Genomes: http://www.ebi.ac.uk/2can/genomes/bacteria/Vibrio_vulnificus.html NMPDR: http://www.nmpdr.org/FIG/wiki/rest.cgi/NmpdrPlugin/SeedViewer?pattern=216895.1;page=SearchResult PEDANT: http://pedant.gsf.de/pedant3htmlview/pedant3view?Method=analysis&Db=p3_p349_Vib_vulni  EBI Proteome Analysis page

• Perform a BLAST search against all proteins from this proteome
  
  
• Download all UniProt Knowledgebase entries of this proteome
  • in UniProt Knowledgebase format
  • in FASTA format
  
  
• Retrieve set of characterized or identified proteins for this proteome
  
  
• Retrieve set of proteins with 3D structure for this proteome

Swiss Institute of Bioinformatics | Disclaimer