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HAMAP: Xanthomonas axonopodis pv. citri (Citrus canker) complete proteome
General information

Species:  Xanthomonas axonopodis pv. citri (Citrus canker)
Species code: XANAC
Taxonomy: Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas (TaxID: 92829) [NEWT/ NCBI]
Description: The Xanthomonadaceae are a family of Gram negative bacteria belonging to the order Xanthomonadales in the gammaproteobacteria. They are typically characterized as environmental organisms and are found in soil and water, as well as plant tissues. Many Xanthomonadaceae, especially species from the genera Xanthomonas and Xylella, cause plant diseases. Only one, Stenotrophomonas maltophilia, has isolates known to be opportunistic human pathogens.

Xanthomonas axonopodis pv. citri causes citrus canker, which affects most commercial citrus cultivars, resulting in significant losses worldwide. Symptoms include canker lesions, leading to abscission of fruit and leaves and general tree decline.
Properties: Presence of flagella: Yes
Human pathogen: No
Interaction: Plant pathogen
Number of membranes: 2
Number of inteins:0
Statistics: Number of XANAC entries in the UniProt Knowledgebase: 4354 (556 in UniProtKB/Swiss-Prot + 3798 in UniProtKB/TrEMBL)


Genome(s) sequenced

Strain:    306
Genome structure:
• Chromosome EMBL accession number AE008923 (circular; 5,175,554 bp) (download entry)
• Plasmid pXAC33 EMBL accession number AE008924 (circular; 33,700 bp) (download entry)
• Plasmid pXAC64 EMBL accession number AE008925 (circular; 64,920 bp) (download entry)
Reference(s):
[1] MEDLINE=22022145; PubMed=12024217; [ NCBI , EBI , Israel , Japan ]
da Silva A.C.R., Ferro J.A., Reinach F.C., Farah C.S., Furlan L.R., Quaggio R.B., Monteiro-Vitorello C.B., Van Sluys M.A., Almeida N.F. Jr., Alves L.M.C., do Amaral A.M., Bertolini M.C., Camargo L.E.A., Camarotte G., Cannavan F., Cardozo J., Chambergo F., Ciapina L.P., Cicarelli R.M.B., Coutinho L.L., Cursino-Santos J.R., El-Dorry H., Faria J.B., Ferreira A.J.S., Ferreira R.C.C., Ferro M.I.T., Formighieri E.F., Franco M.C., Greggio C.C., Gruber A., Katsuyama A.M., Kishi L.T., Leite R.P., Lemos E.G.M., Lemos M.V.F., Locali E.C., Machado M.A., Madeira A.M.B.N., Martinez-Rossi N.M., Martins E.C., Meidanis J., Menck C.F.M., Miyaki C.Y., Moon D.H., Moreira L.M., Novo M.T.M., Okura V.K., Oliveira M.C., Oliveira V.R., Pereira H.A., Rossi A., Sena J.A.D., Silva C., de Souza R.F., Spinola L.A.F., Takita M.A., Tamura R.E., Teixeira E.C., Tezza R.I.D., Trindade dos Santos M., Truffi D., Tsai S.M., White F.F., Setubal J.C., Kitajima J.P. ;
"Comparison of the genomes of two Xanthomonas pathogens with differing host specificities.";
Nature 417:459-463(2002).
Web links:
CBS: http://www.cbs.dtu.dk/services/GenomeAtlas/show-genus.php?kingdom=Bacteria&GLgenus=Xanthomonas&GLspecies=axonopodis&GLstrain=citri306
Entrez Genome Project: http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=txid190486%5Borgn%5D
GIB (DDBJ): http://gib.genes.nig.ac.jp/single/index.php?spid=Xaxo_306
JVCI CMR: http://cmr.jcvi.org/tigr-scripts/CMR/GenomePage.cgi?database=ntxa01
Karyn's Genomes: http://www.ebi.ac.uk/2can/genomes/bacteria/Xanthomonas_axonopodis.html
PEDANT: http://pedant.gsf.de/pedant3htmlview/pedant3view?Method=analysis&Db=p3_p297_Xan_axono
 EBI Proteome Analysis page



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