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HAMAP: Xanthomonas oryzae pv. oryzae complete proteome
General information

Species:  Xanthomonas oryzae pv. oryzae
Species code: XANOR
Taxonomy: Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas (TaxID: 64187) [NEWT/ NCBI]
Description: The Xanthomonadaceae are a family of Gram negative bacteria belonging to the order Xanthomonadales in the gammaproteobacteria. They are typically characterized as environmental organisms and are found in soil and water, as well as plant tissues. Many Xanthomonadaceae, especially species from the genera Xanthomonas and Xylella, cause plant diseases. Only one, Stenotrophomonas maltophilia, has isolates known to be opportunistic human pathogens.

Xanthomonas oryzae is a Gram-negative bacterium and is the causative agent of bacterial blight on rice. Bacterial blight is a major disease in tropical Asian countries where high-yielding rice cultivars are often highly susceptible to it. It is a vascular disease resulting in tannish-gray to white lesions along the leaf veins. In severely infested fields, bacterial blight can cause yield losses up to 50%.
Properties: Presence of flagella: Yes
Human pathogen: No
Interaction: Plant pathogen
Number of membranes: 2
Number of inteins:0
Statistics: Number of XANOR entries in the UniProt Knowledgebase: 4380 (412 in UniProtKB/Swiss-Prot + 3968 in UniProtKB/TrEMBL)


Genome(s) sequenced

Strain:    KACC10331 / KXO85
Genome structure:
Chromosome EMBL accession number AE013598 (circular; 4,941,439 bp) (download entry)
Reference(s):
[1] PubMed=15673718; [ NCBI , EBI , Israel , Japan ]
Lee B.-M., Park Y.-J., Park D.-S., Kang H.-W., Kim J.-G., Song E.-S., Park I.-C., Yoon U.-H., Hahn J.-H., Koo B.-S., Lee G.-B., Kim H., Park H.-S., Yoon K.-O., Kim J.-H., Jung C.-H., Koh N.-H., Seo J.-S., Go S.-J. ;
"The genome sequence of Xanthomonas oryzae pathovar oryzae KACC10331, the bacterial blight pathogen of rice.";
Nucleic Acids Res. 33:577-586(2005).
Web links:
CBS: http://www.cbs.dtu.dk/services/GenomeAtlas/show-genus.php?kingdom=Bacteria&GLgenus=Xanthomonas&GLspecies=oryzae&GLstrain=KACC10331
Entrez Genome Project: http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=txid291331%5Borgn%5D
GIB (DDBJ): http://gib.genes.nig.ac.jp/single/index.php?spid=Xory_KACC10331
JVCI CMR: http://cmr.jcvi.org/tigr-scripts/CMR/GenomePage.cgi?database=ntxo01
Karyn's Genomes: http://www.ebi.ac.uk/2can/genomes/bacteria/Xanthomonas_oryzae.html
PEDANT: http://pedant.gsf.de/pedant3htmlview/pedant3view?Method=analysis&Db=p3_p12931_Xan_oryza
 EBI Proteome Analysis page



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