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HAMAP annotation rule: MF_00010
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General rule information

Accession MF_00010
Dates 1-JUN-2001 (Created)
7-JUL-2010 (Last updated, Version 43)
Data class Protein
Predictors HAMAP; MF_00010; [distribution of match scores in UniProtKB];[seed alignment for MF_00010]
Names UPF0060


Propagated annotation

Identifier, protein and gene names

case <OC:Escherichia> or <OC:Shigella> or <OC:Salmonella>
Identifier YNFA
Protein name
RecName: Full=UPF0060 membrane protein ynfA;
Gene name ynfA

else
Identifier Ynnn
Protein name
RecName: Full=UPF0060 membrane protein ;
end case

Comments

case not defined <Property:Membrane> or <Property:Membrane=1>
SUBCELLULAR LOCATION: Cell membrane; Multi-pass membrane protein (By similarity).

else case <Property:Membrane=2>
SUBCELLULAR LOCATION: Cell inner membrane; Multi-pass membrane protein (By similarity).
end case

SIMILARITY: Belongs to the UPF0060 family.
Cross-references
Pfam PF02694; UPF0060; 1;
case not <OC:Escherichia> and not <OC:Shigella> and not <OC:Salmonella>
General Transmembrane; -; 3-4; trigger=Yes;
end case

Keywords

case defined <Property:Membrane> and <Property:Membrane=2>
Cell inner membrane.
end case

Cell membrane, Membrane, Transmembrane, Transmembrane helix.
Gene Ontology
GO:0005886; Cellular component: plasma membrane.
Features

case <OC:Escherichia> or <OC:Shigella> or <OC:Salmonella>
From: YNFA_ECOLI (P76169)
Key     From     To       Description   Condition   FTGroup
TOPO_DOM     Nter     5       Periplasmic (Potential)      
TRANSMEM     6     26       Helical; (Potential)      
TOPO_DOM     27     30       Cytoplasmic (Potential)      
TRANSMEM     31     51       Helical; (Potential)      
TOPO_DOM     52     60       Periplasmic (Potential)      
TRANSMEM     61     81       Helical; (Potential)      
TOPO_DOM     82     84       Cytoplasmic (Potential)      
TRANSMEM     85     105       Helical; (Potential)      
TOPO_DOM     106     Cter       Periplasmic (Potential)      
end case



Additional information

Size range: 101-122 amino acids
Related UniRules: None
Template: P76169 (YNFA_ECOLI)
Scope: Bacteria
Archaea; Methanosarcinales
Fusion: Nter: None; Cter: None
Duplicate: in ACISJ, ANAVT, ARTS2, DESHY, IDILO, MAGSA, METFK, PSYCK
Plasmid encoded: in ANAVT, ARTS2, POLNA, RALME, RALSO

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UniProtKB rule member sequences