HAMAP annotation rule: MF_00445
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Accession MF_00445
Dates 31-AUG-2001 (Created)
6-OCT-2011 (Last updated, Version 37)
Data class Protein
Names NDH1_NuoN_1




case <OG:Chloroplast>
Identifier NU2C
Protein name
RecName: Full=NAD(P)H-quinone oxidoreductase subunit 2, chloroplastic;
EC=1.6.5.-;
AltName: Full=NAD(P)H dehydrogenase, subunit 2;
AltName: Full=NADH-plastoquinone oxidoreductase subunit 2;
Gene name ndhB

else case <OC:Cyanobacteria>
Identifier NU2C
Protein name
RecName: Full=NAD(P)H-quinone oxidoreductase subunit 2;
EC=1.6.5.-;
AltName: Full=NAD(P)H dehydrogenase subunit 2;
AltName: Full=NADH-plastoquinone oxidoreductase subunit 2;
AltName: Full=NDH-1, subunit 2;
Gene name ndhB

else
Identifier NUON
Protein name
RecName: Full=NADH-quinone oxidoreductase subunit N;
EC=1.6.99.5;
AltName: Full=NADH dehydrogenase I subunit N;
AltName: Full=NDH-1 subunit N;
Gene name nuoN
end case


case <OG:Chloroplast>
FUNCTION: NDH shuttles electrons from NAD(P)H:plastoquinone, via FMN and iron-sulfur (Fe-S) centers, to quinones in the photosynthetic chain and possibly in a chloroplast respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient (By similarity).

else case <OC:Cyanobacteria>
FUNCTION: NDH-1 shuttles electrons from an unknown electron donor, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. Cyanobacterial NDH-1 also plays a role in inorganic carbon-concentration (By similarity).

else case <OC:Actinobacteria> or <OC:Bacteroidetes> or <OC:Chlorobi> or <OC:Deinococcus-Thermus> or <OC:Firmicutes>
FUNCTION: NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient (By similarity).

else
FUNCTION: NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient (By similarity).
end case


case <OG:Chloroplast> or <OC:Cyanobacteria>
CATALYTIC ACTIVITY: NAD(P)H + plastoquinone = NAD(P)(+) + plastoquinol.

else
CATALYTIC ACTIVITY: NADH + quinone = NAD(+) + quinol.
end case


case <OG:Chloroplast>
SUBUNIT: NDH is composed of at least 16 different subunits, 5 of which are encoded in the nucleus (By similarity).

else case <OC:Cyanobacteria>
SUBUNIT: NDH-1 can be composed of about 15 different subunits; different subcomplexes with different compositions have been identified which probably have different functions (By similarity).

else case <OC:Enterobacteriaceae> or <OC:Shewanellaceae> or <OC:Pseudomonadaceae>
SUBUNIT: NDH-1 is composed of 13 different subunits. Subunits NuoA, H, J, K, L, M, N constitute the membrane sector of the complex (By similarity).

else case <OC:Deinococci>
SUBUNIT: NDH-1 is composed of 15 different subunits. Subunits NuoA, H, J, K, L, M, N constitute the membrane sector of the complex (By similarity).

else
SUBUNIT: NDH-1 is composed of 14 different subunits. Subunits NuoA, H, J, K, L, M, N constitute the membrane sector of the complex (By similarity).
end case


case <OG:Chloroplast>
SUBCELLULAR LOCATION: Plastid, chloroplast thylakoid membrane; Multi-pass membrane protein (By similarity).

else case <OC:Cyanobacteria> and not <OC:Gloeobacter>
SUBCELLULAR LOCATION: Cellular thylakoid membrane; Multi-pass membrane protein (By similarity).

else case <OC:Gloeobacter>
SUBCELLULAR LOCATION: Cell inner membrane; Multi-pass membrane protein (By similarity).

else case not defined <Property:Membrane> or <Property:Membrane=1>
SUBCELLULAR LOCATION: Cell membrane; Multi-pass membrane protein (By similarity).

else case <Property:Membrane=2>
SUBCELLULAR LOCATION: Cell inner membrane; Multi-pass membrane protein (By similarity).
end case

SIMILARITY: Belongs to the complex I subunit 2 family.
Pfam PF00361; Oxidored_q1; 1;
PRINTS PR01434; NADHDHGNASE5; 1;
TIGRFAMs TIGR01770; NDH_I_N; 1;
General Transmembrane; -; 11-15; trigger=Yes;
NAD.

case <OG:Chloroplast> or <OC:Cyanobacteria>

else case not <OC:Actinobacteria> and not <OC:Bacteroidetes> and not <OC:Chlorobi> and not <OC:Deinococcus-Thermus> and not <OC:Firmicutes>
end case


case <OG:Chloroplast> or <OC:Cyanobacteria> and not <OC:Gloeobacter>

else case <OC:Gloeobacter>

else case not defined <Property:Membrane> or <Property:Membrane=1>

else case <Property:Membrane=2>
end case

GO:0055114; Biological process: oxidation-reduction process.
GO:0019684; Biological process: photosynthesis, light reaction.

case <OG:Chloroplast> or <OC:Cyanobacteria>
GO:0016655; Molecular function: oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor.

else
GO:0050136; Molecular function: NADH dehydrogenase (quinone) activity.
end case


case <OC:Cyanobacteria> and not <OC:Gloeobacter>
GO:0042651; Cellular component: thylakoid membrane.

else case <OG:Chloroplast>
GO:0009535; Cellular component: chloroplast thylakoid membrane.

else
GO:0005886; Cellular component: plasma membrane.
end case




Size range: 427-554 amino acids
Related UniRules: None
Template: P0AFF0 (NUON_ECOLI); A1B479 (NUON_PARDP); Q56229 (NQO14_THET8): [Recover all]
Scope: Bacteria
Plastid
Fusion: Nter: None; Cter: None
Duplicate: in KORVE, ACIC5, ACICJ, ANAD2, ANADE, ANADF, ANASK, AQUAE, CHLAA, CHLAD, CHLSY, CHLT3, DESMR, GEOBB, GEOMG, GEOSF, GEOSL, GEOSM, GEOUR, HERA2, HYDS0, MYCSJ, NITMU, NITOC, OPITP, PELPD, RHIE6, RHIEC, RHIME, RHISN, RHOP2, RHOP5, RHOPB, RHOPS, RHOS1, RHOS4, RHOS5, RHOSK, ROSCS, ROSS1, SALAI, SALTO, SINMW, SOLUE, SORC5, STRGG, SYMTH, SYNFM, THEYD
Plasmid encoded: in RHIME, SINMW
Comments: 14 proteins form the NDH-1 complex in most bacteria, there are at least 15 subunits in cyanobacteria and chloroplasts. PARDE and THET8 are annotated with another nomenclature. Many higher plant ndhB transcripts undergo RNA editing. The gene is often present in the inverted repeat of higher plant plastid genomes. Was originally constructed as 2 families, MF_00445 and MF_01439 which were merged.

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