Home Proteomes Families Hamap-Scan Documents Downloads Links
HAMAP annotation rule: MF_01328
Send feedback new

General rule information

Accession MF_01328
Dates 29-MAR-2004 (Created)
25-NOV-2009 (Last updated, Version 25)
Data class Protein

case <OC:Bacteria> or <OG:Chloroplast>
Predictors HAMAP; MF_01328_B; [distribution of match scores in UniProtKB];[seed alignment for MF_01328_B]
end case


case <OC:Archaea>
Predictors HAMAP; MF_01328_A; [distribution of match scores in UniProtKB];[seed alignment for MF_01328_A]
end case

Names Ribosomal_L4


Propagated annotation

Identifier, protein and gene names

case <OC:Bacteria> and not <OC:Cyanobacteria>
Identifier RL4
Protein name
RecName: Full=50S ribosomal protein L4;
Gene name rplD

else case <OC:Cyanobacteria>
Identifier RL4
Protein name
RecName: Full=50S ribosomal protein L4;
Gene name rplD, rpl4

else case <OC:Archaea>
Identifier RL4
Protein name
RecName: Full=50S ribosomal protein L4P;
Gene name rpl4p

else case <OG:Chloroplast>
Identifier RK4
Protein name
RecName: Full=50S ribosomal protein L4, chloroplastic;
Gene name rpl4
end case

Comments

case not <OG:Chloroplast>
FUNCTION: One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome (By similarity).
FUNCTION: Forms part of the polypeptide exit tunnel (By similarity).
SUBUNIT: Part of the 50S ribosomal subunit (By similarity).

else case <OG:Chloroplast>
FUNCTION: Probably binds the 23S rRNA (By similarity).
SUBUNIT: Part of the 50S ribosomal subunit (By similarity).
SUBCELLULAR LOCATION: Plastid, chloroplast.
end case

SIMILARITY: Belongs to the ribosomal protein L4P family.
Cross-references
Pfam PF00573; Ribosomal_L4; 1;
case <OC:Archaea>
PROSITE PS00939; RIBOSOMAL_L1E; 1;
end case

Keywords
Ribonucleoprotein, Ribosomal protein, RNA-binding, rRNA-binding.
Gene Ontology
GO:0019843; Molecular function: rRNA binding.
GO:0006412; Biological process: translation.

case <OG:Chloroplast>
GO:0009507; Cellular component: chloroplast.
end case



Additional information


case <OC:Bacteria>
Size range: 199-293 amino acids
end case


case <OC:Archaea>
Size range: 246-283 amino acids
end case

Related UniRules: None
Template: P60723 (RL4_ECOLI); Q9RXK1 (RL4_DEIRA); P12735 (RL4_HALMA); Q5SHN9 (RL4_THET8): [Recover all]
Scope: Bacteria
Archaea
Plastid
Fusion: Nter: None; Cter: <Unknown>
Duplicate: None
Plasmid encoded: None
Comments: Fused with unknown domains in PROAC, SYNJA, SYNJB

View rule in raw text format (no links)



UniProtKB rule member sequences