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HAMAP rule MF_01328

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General rule information [?]

Accession MF_01328
Dates 29-MAR-2004 (Created)
22-SEP-2023 (Last updated, Version 34)
Name Ribosomal_uL4
Scope(s) Bacteria
Archaea
Plastid
Template(s) P60723 (RL4_ECOLI); Q9RXK1 (RL4_DEIRA); P12735 (RL4_HALMA); Q5SHN9 (RL4_THET8); [ Recover all ]
Triggered by
case c? <OC:Bacteria> or <OG:Chloroplast>
HAMAP; MF_01328_B (Get profile general information and statistics)
end case
case c? <OC:Archaea>
HAMAP; MF_01328_A (Get profile general information and statistics)
end case

Propagated annotation [?]

Identifier, protein and gene names [?]

case <OC:Bacteria> and not <OC:Cyanobacteriota>
Identifier RL4
Protein name RecName: Full=Large ribosomal subunit protein uL4;
Gene name Name=rplD;
else case <OC:Cyanobacteriota>
Identifier RL4
Protein name RecName: Full=Large ribosomal subunit protein uL4;
Gene name Name=rplD; Synonyms=rpl4;
else case <OC:Archaea>
Identifier RL4
Protein name RecName: Full=Large ribosomal subunit protein uL4;
Gene name Name=rpl4;
else case <OG:Chloroplast>
Identifier RK4
Protein name RecName: Full=Large ribosomal subunit protein uL4c;
Gene name Name=rpl4;
end case

Comments [?]

case not <OG:Chloroplast>
FUNCTIONOne of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome.
FUNCTIONForms part of the polypeptide exit tunnel.
SUBUNITPart of the 50S ribosomal subunit.
else case <OG:Chloroplast>
FUNCTIONProbably binds the 23S rRNA.
SUBUNITPart of the 50S ribosomal subunit.
SUBCELLULAR LOCATIONPlastid, chloroplast.
end case
SIMILARITYBelongs to the universal ribosomal protein uL4 family.

Keywords [?]


Gene Ontology [?]

GO:0019843; Molecular function:rRNA binding
GO:0006412; Biological process:translation
case <OG:Chloroplast>
GO:0009507; Cellular component:chloroplast
end case

Cross-references [?]

Pfam PF00573; Ribosomal_L4; 1;
NCBIfam TIGR03953; rplD_bact; 1;
NCBIfam TIGR03672; rpl4p_arch; 1;
PROSITE PS00939; RIBOSOMAL_L1E; 1;

Features [?]


Additional information [?]

Size range 246-283 amino acids
Related rules None
Fusion Nter: None Cter: <Unknown>
Comments Fused with unknown domains in CUTAK, SYNJA, SYNJB



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