Home Proteomes Families Hamap-Scan Documents Downloads Links
HAMAP annotation rule: MF_01333
Send feedback new

General rule information

Accession MF_01333
Dates 23-JUN-2004 (Created)
25-NOV-2009 (Last updated, Version 19)
Data class Protein

case <OC:Bacteria> or <OG:Chloroplast>
Predictors HAMAP; MF_01333_B; [distribution of match scores in UniProtKB];[seed alignment for MF_01333_B]
end case


case <OC:Archaea>
Predictors HAMAP; MF_01333_A; [distribution of match scores in UniProtKB];[seed alignment for MF_01333_A]
end case

Names Ribosomal_L5


Propagated annotation

Identifier, protein and gene names

case <OC:Bacteria> and not <OC:Cyanobacteria>
Identifier RL5
Protein name
RecName: Full=50S ribosomal protein L5;
Gene name rplE

else case <OC:Cyanobacteria>
Identifier RL5
Protein name
RecName: Full=50S ribosomal protein L5;
Gene name rplE, rpl5

else case <OC:Archaea>
Identifier RL5
Protein name
RecName: Full=50S ribosomal protein L5P;
Gene name rpl5p

else case <OG:Chloroplast>
Identifier RK5
Protein name
RecName: Full=50S ribosomal protein L5, chloroplastic;
Gene name rpl5
end case

Comments

case <OC:Bacteria>
FUNCTION: This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs (By similarity).
SUBUNIT: Part of the 50S ribosomal subunit; part of the 5S rRNA/L5/L18/L25 subcomplex. Contacts the 5S rRNA and the P site tRNA. Forms a bridge to the 30S subunit in the 70S ribosome (By similarity).

else case <OC:Archaea>
FUNCTION: This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. May contact the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs (By similarity).
SUBUNIT: Part of the 50S ribosomal subunit; contacts the 5S rRNA and probably tRNA. Forms a bridge to the 30S subunit in the 70S ribosome (By similarity).

else case <OG:Chloroplast>
FUNCTION: Binds 5S rRNA, forms part of the central protuberance of the 50S subunit (By similarity).
SUBUNIT: Part of the 50S ribosomal subunit; contacts the 5S rRNA (By similarity).
SUBCELLULAR LOCATION: Plastid, chloroplast.
end case

SIMILARITY: Belongs to the ribosomal protein L5P family.
Cross-references
Pfam PF00281; Ribosomal_L5; 1;
PF00673; Ribosomal_L5_C; 1;
PROSITE PS00358; RIBOSOMAL_L5; 1;
Keywords

case <FT:1>
Acetylation.
end case

Ribonucleoprotein, Ribosomal protein, RNA-binding, rRNA-binding.

case not <OG:Chloroplast>
tRNA-binding.
end case

Gene Ontology
GO:0019843; Molecular function: rRNA binding.

case not <OG:Chloroplast>
GO:0000049; Molecular function: tRNA binding.
end case

GO:0006412; Biological process: translation.

case <OG:Chloroplast>
GO:0009507; Cellular component: chloroplast.
end case

Features

case <OC:Escherichia> or <OC:Shigella>
From: RL5_ECOLI (P62399)
Key     From     To       Description   Condition   FTGroup
MOD_RES     3     3       N6-acetyllysine (By similarity)   K  
end case



Additional information


case <OC:Bacteria>
Size range: 177-238 amino acids
end case


case <OC:Archaea>
Size range: 165-194 amino acids
end case

Related UniRules: None
Template: P08895 (RL5_GEOSE); Q9RXJ0 (RL5_DEIRA); P62399 (RL5_ECOLI); P41201 (RL5_THETH); P14124 (RL5_HALMA); Q5SHQ0 (RL5_THET8): [Recover all]
Scope: Bacteria
Archaea
Plastid
Fusion: Nter: None; Cter: None
Duplicate: None
Plasmid encoded: None

View rule in raw text format (no links)



UniProtKB rule member sequences