HAMAP annotation rule: MF_01399
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Accession MF_01399
Dates 9-MAR-2009 (Created)
30-JUN-2011 (Last updated, Version 10)
Data class Protein
Names ATP_synth_b_prime_bac



Identifier ATPX

case <OC:Bacteria> and <Property:PHOTOSYN>
Protein name
RecName: Full=ATP synthase subunit b';
AltName: Full=ATP synthase F(0) sector subunit b';
AltName: Full=ATPase subunit II;
AltName: Full=F-type ATPase subunit b';
Short=F-ATPase subunit b';

else case <OC:Bacteria> and not <Property:PHOTOSYN>
Protein name
RecName: Full=ATP synthase subunit b/b';
AltName: Full=ATP synthase F(0) sector subunit b/b';
AltName: Full=ATPase subunit II;
AltName: Full=F-type ATPase subunit b/b';
Short=F-ATPase subunit b/b';

else case <OG:Chloroplast>
Protein name
RecName: Full=ATP synthase subunit b', chloroplastic;
AltName: Full=ATP synthase F(0) sector subunit b';
AltName: Full=ATPase subunit II;
end case

Gene name atpG
FUNCTION: F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation (By similarity).
FUNCTION: Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0). The b'-subunit is a diverged and duplicated form of b found in plants and photosynthetic bacteria (By similarity).

case <OG:Chloroplast> or <Property:PHOTOSYN>
SUBUNIT: F-type ATPases have 2 components, F(1) - the catalytic core - and F(0) - the membrane proton channel. F(1) has five subunits: alpha(3), beta(3), gamma(1), delta(1), epsilon(1). F(0) has four main subunits: a(1), b(1), b'(1) and c(10-14). The alpha and beta chains form an alternating ring which encloses part of the gamma chain. F(1) is attached to F(0) by a central stalk formed by the gamma and epsilon chains, while a peripheral stalk is formed by the delta, b and b' chains (By similarity).

else
SUBUNIT: F-type ATPases have 2 components, F(1) - the catalytic core - and F(0) - the membrane proton channel. F(1) has five subunits: alpha(3), beta(3), gamma(1), delta(1), epsilon(1). F(0) has four main subunits: a(1), b/b'(2) and c(10-14). The alpha and beta chains form an alternating ring which encloses part of the gamma chain. F(1) is attached to F(0) by a central stalk formed by the gamma and epsilon chains, while a peripheral stalk is formed by the delta and b/b' chains (By similarity).
end case


case <OG:Chloroplast>
SUBCELLULAR LOCATION: Plastid, chloroplast thylakoid membrane; Single-pass membrane protein (By similarity).

else case <OC:Cyanobacteria> and not <OC:Gloeobacter>
SUBCELLULAR LOCATION: Cellular thylakoid membrane; Single-pass membrane protein (By similarity).

else case <OC:Gloeobacter>
SUBCELLULAR LOCATION: Cell inner membrane; Single-pass membrane protein (By similarity).

else case not defined <Property:Membrane> or <Property:Membrane=1>
SUBCELLULAR LOCATION: Cell membrane; Single-pass membrane protein (By similarity).

else case <Property:Membrane=2>
SUBCELLULAR LOCATION: Cell inner membrane; Single-pass membrane protein (By similarity).
end case


case <OG:Chloroplast>
MISCELLANEOUS: In plastids the F-type ATPase is also known as CF(1)CF(0).
end case

SIMILARITY: Belongs to the ATPase B chain family.
Pfam PF00430; ATP-synt_B; 1;
General Transmembrane; -; 1; trigger=Yes;

case <OG:Chloroplast> or <OC:Cyanobacteria> and not <OC:Gloeobacter>

else case <OC:Gloeobacter>

else case not defined <Property:Membrane> or <Property:Membrane=1>

else case <Property:Membrane=2>
end case

GO:0046933; Molecular function: hydrogen ion transporting ATP synthase activity, rotational mechanism.

case <OC:Cyanobacteria> and not <OC:Gloeobacter>
GO:0042651; Cellular component: thylakoid membrane.

else case <OG:Chloroplast>
GO:0009535; Cellular component: chloroplast thylakoid membrane.

else
GO:0042777; Biological process: plasma membrane ATP synthesis coupled proton transport.
GO:0005886; Cellular component: plasma membrane.
end case




Size range: 138-207 amino acids
Related UniRules: MF_01398 (ATPF)
Template: P12410 (ATPX_NOSS1); O05332 (ATPX_RHOCA): [Recover all]
Scope: Bacteria; Cyanobacteria
Bacteria; Rhizobiales
Bacteria; Rhodobacterales
Bacteria; Rhodospirillales
Plastid
Fusion: Nter: None; Cter: None
Duplicate: None
Plasmid encoded: None
Comments: Quite a few non-model bacteria have more than 1 copy of this protein, including putative copies of the b' subunit; exactly which copies are found in the enzyme requires more study.

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