HAMAP annotation rule: MF_01456
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Accession MF_01456
Dates 12-NOV-2009 (Created)
6-OCT-2011 (Last updated, Version 9)
Data class Protein
Names NDH1_NuoK




case <OG:Chloroplast>
Identifier NU4LC
Protein name
RecName: Full=NAD(P)H-quinone oxidoreductase subunit 4L, chloroplastic;
EC=1.6.5.-;
AltName: Full=NAD(P)H dehydrogenase subunit 4L;
AltName: Full=NADH-plastoquinone oxidoreductase subunit 4L;
Gene name ndhE

else case <OC:Cyanobacteria>
Identifier NU4LC
Protein name
RecName: Full=NAD(P)H-quinone oxidoreductase subunit 4L;
EC=1.6.5.-;
AltName: Full=NAD(P)H dehydrogenase subunit 4L;
AltName: Full=NADH-plastoquinone oxidoreductase subunit 4L;
AltName: Full=NDH-1, subunit 4L;
AltName: Full=NDH-E;
Gene name ndhE

else
Identifier NUOK
Protein name
RecName: Full=NADH-quinone oxidoreductase subunit K;
EC=1.6.99.5;
AltName: Full=NADH dehydrogenase I subunit K;
AltName: Full=NDH-1 subunit K;
Gene name nuoK
end case


case <OG:Chloroplast>
FUNCTION: NDH shuttles electrons from NAD(P)H:plastoquinone, via FMN and iron-sulfur (Fe-S) centers, to quinones in the photosynthetic chain and possibly in a chloroplast respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient (By similarity).

else case <OC:Cyanobacteria>
FUNCTION: NDH-1 shuttles electrons from an unknown electron donor, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. Cyanobacterial NDH-1 also plays a role in inorganic carbon-concentration (By similarity).

else case <OC:Actinobacteria> or <OC:Bacteroidetes> or <OC:Chlorobi> or <OC:Deinococcus-Thermus> or <OC:Firmicutes>
FUNCTION: NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient (By similarity).

else
FUNCTION: NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient (By similarity).
end case


case <OG:Chloroplast> or <OC:Cyanobacteria>
CATALYTIC ACTIVITY: NAD(P)H + plastoquinone = NAD(P)(+) + plastoquinol.

else
CATALYTIC ACTIVITY: NADH + quinone = NAD(+) + quinol.
end case


case <OG:Chloroplast>
SUBUNIT: NDH is composed of at least 16 different subunits, 5 of which are encoded in the nucleus (By similarity).

else case <OC:Cyanobacteria>
SUBUNIT: NDH-1 can be composed of about 15 different subunits; different subcomplexes with different compositions have been identified which probably have different functions (By similarity).

else case <OC:Enterobacteriaceae> or <OC:Shewanellaceae> or <OC:Pseudomonadaceae>
SUBUNIT: NDH-1 is composed of 13 different subunits. Subunits NuoA, H, J, K, L, M, N constitute the membrane sector of the complex (By similarity).

else case <OC:Deinococci>
SUBUNIT: NDH-1 is composed of 15 different subunits. Subunits NuoA, H, J, K, L, M, N constitute the membrane sector of the complex (By similarity).

else
SUBUNIT: NDH-1 is composed of 14 different subunits. Subunits NuoA, H, J, K, L, M, N constitute the membrane sector of the complex (By similarity).
end case


case <OG:Chloroplast>
SUBCELLULAR LOCATION: Plastid, chloroplast thylakoid membrane; Multi-pass membrane protein (By similarity).

else case <OC:Cyanobacteria> and not <OC:Gloeobacter>
SUBCELLULAR LOCATION: Cellular thylakoid membrane; Multi-pass membrane protein (By similarity).

else case <OC:Gloeobacter>
SUBCELLULAR LOCATION: Cell inner membrane; Multi-pass membrane protein (By similarity).

else case not defined <Property:Membrane> or <Property:Membrane=1>
SUBCELLULAR LOCATION: Cell membrane; Multi-pass membrane protein (By similarity).

else case <Property:Membrane=2>
SUBCELLULAR LOCATION: Cell inner membrane; Multi-pass membrane protein (By similarity).
end case

SIMILARITY: Belongs to the complex I subunit 4L family.
Pfam PF00420; Oxidored_q2; 1;
General Transmembrane; -; 3; trigger=Yes;
NAD.

case <OG:Chloroplast> or <OC:Cyanobacteria>

else case not <OC:Actinobacteria> and not <OC:Bacteroidetes> and not <OC:Chlorobi> and not <OC:Deinococcus-Thermus> and not <OC:Firmicutes>
end case


case <OG:Chloroplast> or <OC:Cyanobacteria> and not <OC:Gloeobacter>

else case <OC:Gloeobacter>

else case not defined <Property:Membrane> or <Property:Membrane=1>

else case <Property:Membrane=2>
end case

GO:0055114; Biological process: oxidation-reduction process.
GO:0019684; Biological process: photosynthesis, light reaction.

case <OG:Chloroplast> or <OC:Cyanobacteria>
GO:0016655; Molecular function: oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor.

else
GO:0050136; Molecular function: NADH dehydrogenase (quinone) activity.
end case


case <OC:Cyanobacteria> and not <OC:Gloeobacter>
GO:0042651; Cellular component: thylakoid membrane.

else case <OG:Chloroplast>
GO:0009535; Cellular component: chloroplast thylakoid membrane.

else
GO:0005886; Cellular component: plasma membrane.
end case




Size range: 93-148 amino acids
Related UniRules: None
Template: P0AFE4 (NUOK_ECOLI); Q56226 (NQO11_THET8); P29923 (NQO11_PARDE): [Recover all]
Scope: Bacteria
Plastid
Fusion: Nter: None; Cter: None
Duplicate: in KORVE, AQUAE, GEOBB, GEOMG, GEOSF, GEOSL, GEOSM, GEOUR, RHIE6, RHIEC, RHIME, RHISN, RHOPA, SINMW, SOLUE, STRAW, STRCO, STRGG, SYMTH, SYNFM
Plasmid encoded: in RHIME, SINMW
Comments: 14 proteins form the NDH-1 complex in most bacteria, there are at least 15 subunits in cyanobacteria and chloroplasts. PARDE and THET8 are annotated with another nomenclature.

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