HAMAP rule MF_00009
General rule information
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Accession | MF_00009 |
Dates | 1-JUN-2001 (Created) 6-FEB-2023 (Last updated, Version 32) |
Name | Endoribonucl_YbeY |
Scope | Bacteria |
Templates | P71335 (YBEY_HAEIN); Q9X1J7 (YBEY_THEMA); O67367 (YBEY_AQUAE); P0A898 (YBEY_ECOLI): [Recover all] |
Triggered by |
Propagated annotation
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Identifier, protein and gene names
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Identifier |
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Protein name |
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Gene name |
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Comments
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Function | Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. |
case <FTGroup:1>
Cofactor | Zn(2+) Note: Binds 1 zinc ion. |
end case
Subcellular location | Cytoplasm. |
Similarity | Belongs to the endoribonuclease YbeY family. |
Keywords
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case <FTGroup:1>
end case
Gene Ontology
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GO:0004521; Molecular function: RNA endonuclease activity.
GO:0042254; Biological process: ribosome biogenesis.
GO:0006364; Biological process: rRNA processing.
GO:0042254; Biological process: ribosome biogenesis.
GO:0006364; Biological process: rRNA processing.
case <FTGroup:1>
GO:0008270; Molecular function: zinc ion binding.
end case
GO:0005737; Cellular component: cytoplasm.
Cross-references
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Features
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From: YBEY_HAEIN (P71335) | ||||||||||||
Key | From | To | Description | Tag | Condition | FTGroup | ||||||
BINDING | 114 | 114 | /ligand="Zn(2+)" /ligand_id="ChEBI:CHEBI:29105" /ligand_note="catalytic | H | 1 | |||||||
BINDING | 118 | 118 | /ligand="Zn(2+)" /ligand_id="ChEBI:CHEBI:29105" /ligand_note="catalytic | H | 1 | |||||||
BINDING | 124 | 124 | /ligand="Zn(2+)" /ligand_id="ChEBI:CHEBI:29105" /ligand_note="catalytic | [HD] | 1 |
Additional information
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Size range | 101-280 amino acids |
Related rules | None |
Fusion | Nter: <Unknown>; Cter: None |
Comments | Fused with an unknown domain in some species. |