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| Documentation |
HAMAP family profiles
- User Manual for the Web View
- HAMAP profile syntax
- Standard operating procedure (SOP) for HAMAP family profiles creation
HAMAP annotation rules
- User Manual for the Web View
- UniRule format
- Standard operating procedure (SOP) for HAMAP annotation rule creation
HAMAP-Scan
Publications
- "HAMAP in 2015: updates to the protein family classification and annotation system." Nucleic Acids Res. 43:D1064-D1070(2015).
- "HAMAP in 2013, new developments in the protein family classification and annotation system." Nucleic Acids Res. 41:D584-D589(2013).
- "HAMAP: a database of completely sequenced microbial proteome sets and manually curated microbial protein families in UniProtKB/Swiss-Prot." Nucleic Acids Res. 37:D471-D478(2009).
- "Automated annotation of microbial proteomes in Swiss-Prot." Comput. Biol. Chem. 27:49-58(2003).
- "HAMAP as SPARQL rules—A portable annotation pipeline for genomes and proteomes." GigaScience. 9:2(2020).