HAMAP
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Documentation
HAMAP family profiles
User Manual for the Web View
HAMAP profile syntax
Standard operating procedure (SOP) for HAMAP family profiles creation
HAMAP annotation rules
User Manual for the Web View
UniRule format
Standard operating procedure (SOP) for HAMAP annotation rule creation
HAMAP-Scan
User Manual
Publications
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HAMAP in 2015: updates to the protein family classification and annotation system.
" Nucleic Acids Res. 43:D1064-D1070(2015).
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HAMAP in 2013, new developments in the protein family classification and annotation system.
" Nucleic Acids Res. 41:D584-D589(2013).
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HAMAP: a database of completely sequenced microbial proteome sets and manually curated microbial protein families in UniProtKB/Swiss-Prot.
" Nucleic Acids Res. 37:D471-D478(2009).
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Automated annotation of microbial proteomes in Swiss-Prot.
" Comput. Biol. Chem. 27:49-58(2003).
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HAMAP as SPARQL rules—A portable annotation pipeline for genomes and proteomes.
" GigaScience. 9:2(2020).