HAMAP Documentation

HAMAP family profiles

• User Manual for the Web View
• HAMAP profile syntax
• Standard operating procedure (SOP) for HAMAP family profiles creation

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HAMAP annotation rules

• User Manual for the Web View
• UniRule format
• Standard operating procedure (SOP) for HAMAP annotation rule creation

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HAMAP-Scan

• User Manual

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Publications

• "HAMAP in 2015: updates to the protein family classification and annotation system." Nucleic Acids Res. 43:D1064-D1070(2015).
• "HAMAP in 2013, new developments in the protein family classification and annotation system." Nucleic Acids Res. 41:D584-D589(2013).
• "HAMAP: a database of completely sequenced microbial proteome sets and manually curated microbial protein families in UniProtKB/Swiss-Prot." Nucleic Acids Res. 37:D471-D478(2009).
• "Automated annotation of microbial proteomes in Swiss-Prot." Comput. Biol. Chem. 27:49-58(2003).
• "HAMAP as SPARQL rules—A portable annotation pipeline for genomes and proteomes." GigaScience. 9:2(2020).