HAMAP rule MF_00657
General rule information
[?]
| Accession | MF_00657 |
| Dates | 15-JUN-2003 (Created)
17-FEB-2023 (Last updated, Version 40) |
| Name | Hydroxyl_YbiX |
| Scope(s) |
Bacteria Cyanobacteriota Pseudomonadota |
| Template(s) | None (); [ Recover all ] |
| Triggered by |
HAMAP; MF_00657 (Get profile general information and statistics) |
Propagated annotation
[?]
Identifier, protein and gene names
[?]
| case <OC:Escherichia> or <OC:Shigella> or <OC:Salmonella> | |
| Identifier | YBIX |
| Protein name | RecName: Full=PKHD-type hydroxylase YbiX; EC=1.14.11.-; |
| Gene name | Name=ybiX; |
| else | |
| Identifier | Ynnn |
| Protein name | RecName: Full=PKHD-type hydroxylase EC=1.14.11.-; |
| end case | |
Comments
[?]
| case <FTGroup:1> | |
| COFACTOR | Name=Fe(2+); Xref=ChEBI:CHEBI:29033; Note=Binds 1 Fe(2+) ion per subunit.; |
| COFACTOR | Name=L-ascorbate; Xref=ChEBI:CHEBI:38290; |
| end case | |
Keywords
[?]
| Oxidoreductase | |
| Dioxygenase | |
| case <FTGroup:1> | |
| Metal-binding | |
| Iron | |
| Vitamin C | |
| end case | |
Gene Ontology
[?]
| case <FTGroup:1> | |
| GO:0005506; Molecular function:iron ion binding | |
| end case | |
| GO:0016706; Molecular function:2-oxoglutarate-dependent dioxygenase activity | |
Cross-references
[?]
Features
[?]
| From: YBIX_ECOLI (P75779) | ||||||||||||
| Key | From | To | Description | Tag | Condition | FTGroup | ||||||
| BINDING | 96 | 96 | /ligand="Fe cation" /ligand_id="ChEBI:CHEBI:24875" |
H | 1 | |||||||
| BINDING | 98 | 98 | /ligand="Fe cation" /ligand_id="ChEBI:CHEBI:24875" |
D | 1 | |||||||
| BINDING | 158 | 158 | /ligand="Fe cation" /ligand_id="ChEBI:CHEBI:24875" |
H | 1 | |||||||
| BINDING | 168 | 168 | /ligand="2-oxoglutarate" /ligand_id="ChEBI:CHEBI:16810" |
R | ||||||||
Additional information
[?]
| Size range | 218-259 amino acids |
| Related rules |
None |
| Fusion | Nter: None Cter: None |