HAMAP rule MF_00788
General rule information
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| PURL | https://purl.expasy.org/hamap/rule/MF_00788 |
| Accession | MF_00788 |
| Dates | 28-FEB-2005 (Created)
05-DEC-2025 (Last updated, Version ) |
| Name | Ribosomal_eL40 |
| Scope(s) |
Archaea |
| Template(s) | Q980V5; Q5JJD3; P54058; [ Recover all ] |
| Triggered by |
HAMAP; MF_00788 (Get profile general information and statistics) |
Propagated annotation
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Identifier, protein and gene names
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| Identifier | RL40 |
| Protein name | RecName: Full=Large ribosomal subunit protein eL40; |
| Gene name | Name=rpl40e; |
Comments
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| FUNCTION | Component of the large ribosomal subunit. The ribosome is a large ribonucleoprotein complex responsible for the synthesis of proteins in the cell. |
| case <FTGroup:1> | |
| COFACTOR | Name=Zn(2+); Xref=ChEBI:CHEBI:29105; Note=Binds 1 Zn(2+) per subunit. |
| end case | |
| SUBUNIT | Part of the 50S ribosomal subunit. |
| SIMILARITY | Belongs to the eukaryotic ribosomal protein eL40 family. |
Keywords
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| Ribonucleoprotein | |
| Ribosomal protein | |
| RNA-binding | |
| rRNA-binding | |
| case <FTGroup:1> | |
| Zinc | |
| Metal-binding | |
| end case | |
Gene Ontology
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| GO:0019843; Molecular function:rRNA binding | |
| GO:0006412; Biological process:translation | |
| case <FTGroup:1> | |
| GO:0008270; Molecular function:zinc ion binding | |
| end case | |
Cross-references
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Features
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| From: RL40_SACS2 (Q980V5) | ||||||||||||
| Key | From | To | Description | Tag | Condition | FTGroup | ||||||
| BINDING | 22 | 22 | /ligand="Zn(2+)" /ligand_id="ChEBI:CHEBI:29105" |
C | 1 | |||||||
| BINDING | 25 | 25 | /ligand="Zn(2+)" /ligand_id="ChEBI:CHEBI:29105" |
C | 1 | |||||||
| BINDING | 36 | 36 | /ligand="Zn(2+)" /ligand_id="ChEBI:CHEBI:29105" |
C | 1 | |||||||
| BINDING | 39 | 39 | /ligand="Zn(2+)" /ligand_id="ChEBI:CHEBI:29105" |
C | 1 | |||||||
Additional information
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| Size range | 47-56 amino acids |
| Related rules |
None |
| Fusion | Nter: None Cter: None |
| Comments | T.kodakaraensis has a Zn(2+) ion, the Cys residues are fairly well conserved. |