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HAMAP rule MF_00962

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General rule information [?]

Accession MF_00962
Dates 27-MAY-2013 (Created)
1-JUN-2023 (Last updated, Version 10)
Name Sigma70_FliA
Bacteria; Pseudomonadota
Template P0AEM6 (FLIA_ECOLI)

Propagated annotation [?]

Identifier, protein and gene names [?]

Protein name
RecName: Full=RNA polymerase sigma factor FliA;
AltName: Full=RNA polymerase sigma factor for flagellar operon;
AltName: Full=Sigma F;
AltName: Full=Sigma-28;
Gene name

Comments [?]

Function Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor controls the expression of flagella-related genes.
Subcellular location Cytoplasm.
Similarity Belongs to the sigma-70 factor family. FliA subfamily.

Keywords [?]

Gene Ontology [?]

GO:0003677; Molecular function: DNA binding.
GO:0016987; Molecular function: sigma factor activity.
GO:0010468; Biological process: regulation of gene expression.
GO:0006352; Biological process: DNA-templated transcription initiation.
GO:0005737; Cellular component: cytoplasm.

Cross-references [?]

PROSITE PS00715; SIGMA70_1; 1;
PS00716; SIGMA70_2; 1;
Pfam PF04542; Sigma70_r2; 1;
PF04539; Sigma70_r3; 1;
PF04545; Sigma70_r4; 1;
NCBIfam TIGR02479; FliA_WhiG; 1;
TIGR02937; sigma70-ECF; 1;

Features [?]

Key     From     To       Description   Tag   Condition   FTGroup
DNA_BIND     207     226       H-T-H motif        
REGION     16     88       Sigma-70 factor domain-2        
REGION     96     166       Sigma-70 factor domain-3        
REGION     185     233       Sigma-70 factor domain-4        
MOTIF     43     46       Interaction with polymerase core subunit RpoC     D-[LMI]-[LIVMT]-Q  

Additional information [?]

Size range 207-306 amino acids
Related rules None
Fusion None